CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0276600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.79 93.6 Os03g0276600 AK066437.1 - Hypothetical protein 2e-1 At5g57540 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative S.X. H.G.
0.43 55.4 Os06g0192500 AK067746.1 - ATP-dependent helicase, DEAH-box family protein 1e-6 At1g26370 RNA helicase, putative S.X. H.G.
0.42 53.9 Os02g0668400 9630.m04338 - ab initio prediction with EST support 4e-6 At1g20370 tRNA pseudouridine synthase family protein S.X. H.G.
0.40 51.1 Os12g0194800 AK101810.1 - contains InterPro domain(s): IPR001406 3e-19 At1g09800 tRNA pseudouridine synthase family protein S.X. H.G.
0.37 45.0 Os03g0202300 AK071317.1 - Conserved hypothetical protein 48 family protein 5e-8 At3g19630 radical SAM domain-containing protein S.X. H.G.
0.37 45.0 Os02g0598400 AK068111.1 - Lipovitellin, superhelical domain containingprotein 1e-1 At3g48470 EMB2423 (EMBRYO DEFECTIVE 2423) S.X. H.G.
0.37 45.0 Os03g0105700 AK100031.1 - Protein of unknown function DUF296 domaincontaining protein 3e+0 At5g44570 unknown protein S.X. H.G.
0.37 45.0 Os04g0112300 AK073153.1 - Eukaryotic initiation factor 3, gamma subunitfamily protein 4e-3 At2g45730 eukaryotic initiation factor 3 gamma subunit family protein S.X. H.G.
0.36 44.0 Os01g0687600 NM_192106.1 - Conserved hypothetical protein 1e-4 At3g48120 unknown protein S.X. H.G.
0.34 40.0 Os06g0310200 CB096959 - Conserved hypothetical protein 1e-10 At4g15570 MAA3 (MAGATAMA 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.8 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-2 40 Os11g0295900 9639.m01770 - Pathogenesis-related transcriptional factor andERF domain containing protein 1e-5 At5g65510 AIL7 (AINTEGUMENTA-like 7) C.G. S.X.
0.01 6e-3 44 Os07g0522600 AK067405.1 - Metabotropic gamma-aminobutyric acid receptor,type B family protein 8e-6 At1g05200 ATGLR3.4 C.G. S.X.
0.01 2e-2 42 Os06g0472400 AK063108.1 - Protein of unknown function UPF0261 domaincontaining protein 6e-12 At5g66420 - C.G. S.X.
0.01 9e-2 40 Os11g0146700 AK065900.1 - Conserved hypothetical protein 4e-25 At2g26460 RED family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Arabidopsis thaliana At5g57540 835858 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO - - - C.G. S.X.
0.02 1e+0 36 Glycine max GmaAffx.20675.1.S1_at BM954626 - - 2e-18 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
0.51 7e-123 440 Hordeum vulgare Contig15572_at Contig15572 - - 5e-1 At3g52860 unknown protein C.G. S.X.
0.02 4e+0 34 Populus trichocarpa PtpAffx.86704.1.S1_at DN494029 hypothetical protein - 2e+0 At3g09600 myb family transcription factor C.G. S.X.
0.51 3e-65 250 Triticum aestivum Ta.9746.1.S1_at BQ162332 - - 9e+0 At4g38840 auxin-responsive protein, putative C.G. S.X.
0.02 6e-2 38 Vitis vinifera 1617497_at CF202356.1 hypothetical protein LOC100248145 - 4e-22 At1g04410 malate dehydrogenase, cytosolic, putative C.G. S.X.
0.31 5e-37 155 Zea mays Zm.13465.1.A1_at AY109099.1 hypothetical protein LOC100274229 - 3e+0 At5g25460 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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