CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0271100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 94.6 Os03g0271100 AB095095.1 - Sigma factor SIG2B 4e-3 At1g08540 SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2) S.X. H.G.
0.77 93.1 Os12g0233300 AK058317.1 - Histidine triad (HIT) protein family protein 2e+0 At1g07700 thioredoxin family protein S.X. H.G.
0.67 87.2 Os01g0142100 AK065031.1 - Peptidase M50 family protein 1e-6 At5g05740 EGY2 S.X. H.G.
0.61 81.2 Os11g0153700 AK058576.1 - Signal recognition particle 54 kDa protein,chloroplast precursor (SRP54) (54 chloroplast protein)(54CP) (FFC) 2e-35 At5g03940 CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) S.X. H.G.
0.50 68.0 Os01g0705300 AK102719.1 - Conserved hypothetical protein 1e-1 At1g60320 Toll-Interleukin-Resistance (TIR) domain-containing protein S.X. H.G.
0.46 60.9 Os01g0558800 AK068120.1 - Conserved hypothetical protein 8e-1 At5g19300 - S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
23.9 99.4 GSM207560 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
22.2 99.3 GSM207559 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
19.6 99.1 GSM207565 Mudanjiang8 wild type control rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
17.1 98.8 GSM207558 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
16.6 98.8 GSM207563 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
16.5 98.8 GSM207564 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
14.6 98.6 GSM207567 Mudanjiang8 wild type control rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
14.5 98.6 GSM207566 Mudanjiang8 wild type control rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
10.2 98.0 GSM207562 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
8.7 97.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 7e-28 127 Os11g0448400 AB095094.1 - RNA polymerase, sigma subunit family protein 7e-2 At1g62240 unknown protein C.G. S.X.
0.04 2e-6 56 Os04g0414200 9632.m03242 - - 2e+0 At3g12835 unknown protein C.G. S.X.
0.01 8e-3 44 Os01g0967050 NM_189411.1 - - 2e-1 At3g14480 glycine/proline-rich protein C.G. S.X.
0.01 8e-3 44 Os04g0372400 AK107450.1 - Conserved hypothetical protein 7e-1 At5g16200 50S ribosomal protein-related C.G. S.X.
0.01 1e-1 40 Os03g0433700 9631.m03130 - - 3e+0 At5g51930 glucose-methanol-choline (GMC) oxidoreductase family protein C.G. S.X.
0.01 1e-1 40 Os03g0678100 9631.m04612 - Protein kinase domain containing protein 2e-1 At2g34870 MEE26 (maternal effect embryo arrest 26) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-3 44 Arabidopsis thaliana At1g08540 837376 SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2) Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light. - - - C.G. S.X.
0.01 4e-1 38 Glycine max GmaAffx.77140.1.S1_at BG047041 - - 5e-6 At1g51540 - C.G. S.X.
0.33 4e-134 478 Hordeum vulgare Contig11428_at Contig11428 - - 3e-2 At2g40080 ELF4 (EARLY FLOWERING 4) C.G. S.X.
0.05 3e-11 71 Populus trichocarpa PtpAffx.211122.1.S1_at pmrna21848 hypothetical protein - 3e-22 At1g08540 SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2) C.G. S.X.
0.22 4e-77 289 Triticum aestivum Ta.7521.1.A1_at BQ165935 - - 2e-2 At2g40080 ELF4 (EARLY FLOWERING 4) C.G. S.X.
0.02 5e-3 42 Vitis vinifera 1615847_at CF373669 similar to SIGB (SIGMA FACTOR B); DNA binding / DNA-directed RNA polymerase/ transcription factor - 5e-15 At1g08540 SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2) C.G. S.X.
0.49 0 688 Zea mays Zm.430.1.S1_at AF099111.1 sigma-like factor2B - 4e+0 At5g04820 OFP13 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006352 Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter.
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage