Gene omics information

Query gene ID	Os03g0270000
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.62	81.5	Os03g0270000	AK106069.1	-	Protein of unknown function DUF296 domaincontaining protein	3e-3	At1g76500	SOB3 (SUPPRESSOR OF PHYB-4#3)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.32	36.3	Os01g0797600	AK069262.1	-	Ethylene responsive element binding factor3(OsERF3)	9e-9	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	31.1	Os02g0766700	AK072062.1	-	Abscisic acid responsive elements-binding factor(ABA-responsive element binding protein 2) (AREB2)	6e-5	At2g36270	ABI5 (ABA INSENSITIVE 5)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.27	27.5	Os01g0667900	AK105335.1	-	Glutaredoxin domain containing protein	2e+0	At4g38140	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.27	27.5	Os01g0159300	AK073728.1	-	Zn-finger, RING domain containing protein	1e+0	At3g61370	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.26	25.6	Os05g0569300	AK065440.1	-	G-box binding factor 1	2e-1	At2g47530	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.26	25.6	Os05g0542200	AK071306.1	-	Epoxide hydrolase family protein	7e-2	At5g53050	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.23	21.2	Os07g0685700	AB074972.1	-	Ethylene insensitive 3 family protein	2e-2	At1g56170	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.21	17.9	Os01g0777200	NM_191475.1	-	Peptidase A1, pepsin family protein	6e-2	At2g36670	aspartyl protease family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.09	4.9	Os02g0712500	AK111115.1	-	Conserved hypothetical protein	2e+0	At1g04330	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.0	98.6	GSM173080	Rice MH63 Control2	GSE7197	Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
13.7	98.5	GSM278855	KT95-418-non-infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
12.6	98.4	GSM173089	Rice MH63 Control3	GSE7197	Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
11.3	98.2	GSM159173	Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10)	GSE6908	Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
10.6	98.1	GSM278853	KT95-418-non-infected, biological rep1	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
10.3	98.1	GSM173086	Rice MH63 Control1	GSE7197	Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
9.3	97.9	GSM159271	Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11)	GSE6908	Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
9.0	97.8	GSM159262	Drought stress, biological rep 1	GSE6901	Expression data for stress treatment in rice seedlings
8.7	97.8	GSM159264	Drought stress, biological rep 3	GSE6901	Expression data for stress treatment in rice seedlings
8.6	97.8	GSM159263	Drought stress, biological rep 2	GSE6901	Expression data for stress treatment in rice seedlings

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	2e-30	135	Os02g0820800	9630.m05730	-	Protein of unknown function DUF296 domaincontaining protein	3e-2	At4g14465	DNA-binding protein-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.21	3e-35	151	Os08g0563200	AK110263.1	-	Protein of unknown function DUF296 domaincontaining protein	2e-1	At1g76500	SOB3 (SUPPRESSOR OF PHYB-4#3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.18	3e-17	91	Os02g0713700	9630.m04710	-	Protein of unknown function DUF296 domaincontaining protein	3e+0	At5g03240	UBQ3 (POLYUBIQUITIN 3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.17	2e-11	71	Os02g0448000	9630.m02338	-	Protein of unknown function DUF296 domaincontaining protein	8e-6	At4g22810	DNA-binding protein-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.13	6e-12	73	Os08g0159700	AK109080.1	-	Protein of unknown function DUF296 domaincontaining protein	6e-1	At2g41225	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-3	44	Arabidopsis thaliana	At1g76500	843983	SOB3 (SUPPRESSOR OF PHYB-4#3)	Encodes an AT hook domain containing protein. Identified in a screen of activation tagged lines that suppress the long-hypocotyl phenotype of a weak phyB allele. Affects cell elongation in the hypocotyl and leaves.Acts redundantly with ESC to modulate hypocotyl growth inhibition in response to light	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	1e-3	46	Glycine max	GmaAffx.38693.1.S1_at	AW349908	-	-	1e-8	At4g17800	DNA-binding protein-related	C.G.	S.X.	Please select
0.30	9e-82	303	Hordeum vulgare	Contig23110_at	Contig23110	-	-	1e+0	At4g38000	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.03	6e-2	40	Populus trichocarpa	PtpAffx.211416.1.S1_at	pmrna22372	AP2 domain-containing transcription factor	-	5e-71	At4g37750	ANT (AINTEGUMENTA)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.27	2e-84	313	Triticum aestivum	TaAffx.16883.1.S1_at	CA660700	-	-	4e+0	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	C.G.	S.X.	Please select
0.02	8e-1	34	Vitis vinifera	1617166_s_at	CA808041	ripening-related protein-like	-	4e-1	At1g54410	dehydrin family protein	C.G.	S.X.	Please select
0.03	2e-2	40	Zea mays	Zm.7591.1.A1_at	CK347203	-	-	2e+0	At1g26945	KDR (KIDARI)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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