CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0261500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 91.1 Os03g0261500 AK064904.1 - Heat shock protein DnaJ family protein 3e-9 At5g22080 DNAJ heat shock N-terminal domain-containing protein S.X. H.G.
0.55 73.7 Os03g0791800 AB079798.1 - Rad6 (Ubiquitin carrier protein) 2e-46 At2g02760 ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) S.X. H.G.
0.55 73.7 Os06g0130900 D10965.1 - Histone H3.3 1e-3 At4g40030 histone H3.2 S.X. H.G.
0.53 71.3 Os08g0366100 AK120339.1 - EDF-1 protein (HMBF1alpha) (Endothelialdifferentiation-related factor 1, isoform alpha)(Fragment) 6e-11 At2g42680 MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A) S.X. H.G.
0.53 71.3 Os05g0489600 D17760.1 - NTGB1 (Fragment) 1e-73 At1g10630 ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) S.X. H.G.
0.52 69.6 Os03g0390600 AF467728.1 - Histone H3.3 5e-105 At4g40040 histone H3.2 S.X. H.G.
0.51 68.7 Os03g0670700 AK119242.1 - Glycine-rich RNA-binding protein GRP1A 2e-6 At4g39260 GR-RBP8 S.X. H.G.
0.50 68.0 Os02g0121300 L29470.1 - Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)(PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-bindingprotein) 9e-12 At4g38740 ROC1 (ROTAMASE CYP 1) S.X. H.G.
0.49 64.4 Os09g0482400 D21284.1 - Heat shock protein 82 4e+0 At5g45360 F-box family protein S.X. H.G.
0.47 62.3 Os02g0161900 AK101547.1 - Ubiquitin 0 At4g05320 UBQ10 (POLYUBIQUITIN 10) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.8 95.7 GSM195229 Endosperm GSE7951 Genome-wide gene expression profiling of rice stigma
3.3 95.1 GSM159272 Rice coleoptiles, 4 days old, anoxic, REPLICATE 2 (Sample #12) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
3.3 95.1 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
3.0 94.6 GSM357137 14-day-old seedling, heat shock, rep 3 GSE14275 Expression data for heat shock in rice seedlings
2.9 94.5 GSM195228 Embryo GSE7951 Genome-wide gene expression profiling of rice stigma
2.8 94.3 GSM409429 Nipponbare_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
2.8 94.3 GSM357136 14-day-old seedling, heat shock, rep 2 GSE14275 Expression data for heat shock in rice seedlings
2.7 94.1 GSM304397 Control for the stable transgenic rice line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
2.7 94.1 GSM302922 seedling_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
2.6 93.8 GSM431931 Root- -Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-2 42 Os05g0590300 AK067788.1 - Esterase/lipase/thioesterase domain containingprotein 6e-1 At3g02460 plant adhesion molecule, putative C.G. S.X.
0.02 7e-2 40 Os02g0831500 AK061268.1 - Sucrose synthase (EC 2.4.1.13) (Sucrose-UDPglucosyltransferase) (Fragment) 3e+0 At5g20830 SUS1 (SUCROSE SYNTHASE 1) C.G. S.X.
0.02 7e-2 40 Os10g0106300 9638.m00073 - - 1e+1 At4g24050 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.01 7e-2 40 Os10g0106750 NM_194527.1 - - 1e+1 At5g24105 AGP41 (ARABINOGALACTAN-PROTEIN 41) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 3e-9 63 Arabidopsis thaliana At5g22080 832269 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:cellular_component unknown;OMBFPAV - - - C.G. S.X.
0.07 2e-1 38 Glycine max GmaAffx.85321.1.S1_at BE610278 - - 5e-15 At5g22080 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.36 5e-80 297 Hordeum vulgare Contig5739_at Contig5739 - - 2e-3 At5g22080 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.41 3e-19 97 Populus trichocarpa PtpAffx.37849.1.S1_at CV236330 hypothetical protein - 2e-59 At5g22080 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.17223.1.S1_at CA618910 - - 2e-1 At3g49820 unknown protein C.G. S.X.
0.11 1e-17 89 Vitis vinifera 1613818_at BQ792651 hypothetical protein LOC100258929 - 2e-27 At5g22080 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.50 0 638 Zea mays Zm.10335.1.A1_at CF016467 dnaJ subfamily C member 8 - 2e-4 At5g22080 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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