Gene omics information

Query gene ID	Os03g0254200
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os03g0254200	CB624264	-	Amino acid/polyamine transporter II family protein	6e-1	At4g34340	TAF8 (TBP-ASSOCIATED FACTOR 8)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	Os10g0529700	AF402795.1	-	-	6e-1	At5g19880	peroxidase, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	Os10g0320100	AK064736.1	-	Flavonoid 3'-monooxygenase (EC 1.14.13.21)(Flavonoid 3'-hydroxylase) (Cytochrome P450 75B2)	6e-2	At5g07990	TT7 (TRANSPARENT TESTA 7)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.58	77.0	Os11g0660000	AK066709.1	-	Sodium/calcium exchanger membrane region domaincontaining protein	1e-12	At2g47600	ATMHX (ARABIDOPSIS THALIANA MAGNESIUM/PROTON EXCHANGER)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.54	71.9	Os02g0644900	AK066709.1	-	Sodium/potassium/calcium exchanger 4 precursor(Na(+)/K(+)/Ca(2+)- exchange protein 4). Splice isoform 2	1e-12	At2g47600	ATMHX (ARABIDOPSIS THALIANA MAGNESIUM/PROTON EXCHANGER)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.52	69.6	Os01g0175700	CB624018	-	HCO3-transporter domain containing protein	2e-5	At1g15460	BOR4 (REQUIRES HIGH BORON 4)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.52	69.6	Os12g0441600	BQ908479	-	O-methyltransferase ZRP4 (EC 2.1.1.-) (OMT)	2e+1	At5g42635	glycine-rich protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.51	68.7	Os04g0578200	AK073300.1	-	Conserved hypothetical protein	6e-1	At3g12977	DNA binding	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.49	64.4	Os02g0589000	AK066288.1	-	Lecithin:cholesterol acyltransferase familyprotein	8e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.49	64.4	Os01g0700100	AK059965.1	-	MtN3 and saliva related transmembrane proteinfamily protein	4e-2	At3g53420	PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.4	99.8	GSM421726	MOCK, 96 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
30.9	99.7	GSM421682	XOC, 24 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
30.7	99.7	GSM421706	XOO, 96 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
24.8	99.5	GSM421724	MOCK, 96 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
24.5	99.4	GSM421703	XOO, 96 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
22.1	99.3	GSM421725	MOCK, 96 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
21.2	99.2	GSM421683	XOC, 96 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
18.1	98.9	GSM421686	XOC, 96 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
16.9	98.8	GSM421705	XOO, 96 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
16.0	98.7	GSM421685	XOC, 96 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-1	38	Os01g0883900	AK119636.1	-	Putative methyltransferase DUF248 family protein	2e-12	At5g64030	dehydration-responsive protein-related	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	3e-1	38	Os03g0183900	9631.m00801	-	ATPase 10, plasma membrane-type (EC 3.6.3.6)(Proton pump 10)	2e-30	At1g17260	AHA10 (Autoinhibited H(+)-ATPase isoform 10)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	3e-1	38	Os06g0647500	AK109473.1	-	Hypothetical protein	6e-1	At1g76220	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e+0	36	Os01g0895600	AK099626.1	-	Calreticulin 3 precursor	3e-34	At1g08450	CRT3 (CALRETICULIN 3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e+0	36	Os02g0797300	AK121272.1	-	Plasma membrane H+-ATPase (Fragment)	5e-13	At3g42640	AHA8 (Arabidopsis H(+)-ATPase 8)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e+0	36	Os03g0145500	AK066503.1	-	DENN domain containing protein	2e-6	At2g20320	-	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	36	Arabidopsis thaliana	At4g34340	829584	TAF8 (TBP-ASSOCIATED FACTOR 8)	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e-1	36	Glycine max	PsAffx.psHB030xD23f_s_at	PsAffx.psHB030xD23f	-	-	2e+0	At5g01900	WRKY62	C.G.	S.X.	Please select
0.37	3e-19	95	Hordeum vulgare	Contig15813_at	Contig15813	-	-	2e+0	At1g47410	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	34	Populus trichocarpa	PtpAffx.32710.1.S1_at	BI124078	hypothetical protein	-	3e+0	At3g06270	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.30319.1.S1_at	CA626214	-	-	4e+0	At5g47870	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1621698_at	BQ796130	similar to bHLH transcription factor Upa20	-	8e-2	At3g20510	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	Zm.6757.1.S1_at	CF636648	GAST1 protein	-	2e-3	At5g15230	GASA4 (GAST1 PROTEIN HOMOLOG 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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