CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0253800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os03g0253800 AK120111.1 - Hypothetical protein 9e-8 At4g00026 - S.X. H.G.
0.44 58.1 Os08g0399600 AK071873.1 - Elongation factor Ts (EF-Ts) 5e-5 At4g11120 translation elongation factor Ts (EF-Ts), putative S.X. H.G.
0.40 51.1 Os05g0103600 AK102584.1 - Ankyrin-like protein 2e-1 At2g36680 - S.X. H.G.
0.40 51.1 Os09g0359900 AK105521.1 - Conserved hypothetical protein 7e-1 At4g14000 unknown protein S.X. H.G.
0.36 44.0 Os11g0143500 AK102697.1 - L-Galactono-1,4-lactone dehydrogenase 3e-13 At3g47930 ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE) S.X. H.G.
0.33 38.8 Os01g0280400 AK120125.1 - DNA-binding protein 1e+0 At2g35640 hydroxyproline-rich glycoprotein family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.6 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
7.7 97.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-2 44 Os03g0196600 9631.m00907 - Serine acetyltransferase (EC 2.3.1.30) 3e+0 At4g08230 glycine-rich protein C.G. S.X.
0.01 3e-1 38 Os03g0282300 9631.m01709 - Conserved hypothetical protein 2e+0 At1g52342 unknown protein C.G. S.X.
0.01 3e-1 38 Os07g0207700 AK109769.1 - Conserved hypothetical protein 4e+0 At5g11860 NLI interacting factor (NIF) family protein C.G. S.X.
0.01 3e-1 38 Os08g0562700 AK066773.1 - Aminopeptidase N 4e-44 At1g63770 peptidase M1 family protein C.G. S.X.
0.01 7e-1 38 Os03g0333200 AK099791.1 - Resistance protein candidate (Fragment) 2e-58 At3g51550 FER (FERONIA) C.G. S.X.
0.01 1e+0 36 Os01g0846500 NM_190588.1 - PAP/25A core domain containing protein 7e-1 At2g46100 unknown protein C.G. S.X.
0.01 1e+0 36 Os03g0436500 AK070610.1 - - 1e+0 At2g21900 WRKY59 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 9e-8 59 Arabidopsis thaliana At4g00026 3770411 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFPO - - - C.G. S.X.
0.08 1e-7 59 Glycine max Gma.2822.1.S1_at CD397419 - - 4e-8 At4g00026 - C.G. S.X.
0.28 7e-78 291 Hordeum vulgare Contig8321_at Contig8321 - - 9e-3 At4g00026 - C.G. S.X.
0.03 2e-3 46 Populus trichocarpa PtpAffx.23321.1.S1_at CV260320 - - 6e-23 At4g00026 - C.G. S.X.
0.25 1e-44 182 Triticum aestivum Ta.2839.1.S1_at CD876245 - - 8e-4 At4g00026 - C.G. S.X.
0.03 3e-8 59 Vitis vinifera 1614232_at CF214793 hypothetical protein LOC100259727 - 7e-11 At4g00026 - C.G. S.X.
0.06 3e-12 73 Zea mays ZmAffx.161.1.A1_at AI668163 hypothetical protein LOC100193378 - 3e+0 At4g17560 ribosomal protein L19 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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