CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0248000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 76.3 Os03g0248000 AK070612.1 - Autophagy protein Apg9 family protein 3e-5 At2g31260 APG9 (autophagy 9) S.X. H.G.
0.50 68.0 Os02g0719800 CR278715 - - 9e-1 At1g17350 auxin-induced-related / indole-3-acetic acid induced-related S.X. H.G.
0.47 62.3 Os01g0958700 NM_189338.1 - Membrane attack complexcomponent/perforin/complement C9 family protein 2e-20 At4g24290 - S.X. H.G.
0.47 62.3 Os01g0261100 NM_187954.1 - Zn-finger, RING domain containing protein 1e-2 At1g19680 protein binding / zinc ion binding S.X. H.G.
0.43 55.4 Os01g0825700 AK070492.1 - VHS2 protein (Fragment) 1e-6 At1g76970 VHS domain-containing protein / GAT domain-containing protein S.X. H.G.
0.38 46.9 Os04g0643600 AK105170.1 - Cyclic nucleotide-gated channel C (Fragment) 9e-9 At5g57940 ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5) S.X. H.G.
0.32 36.3 Os08g0430000 AK068194.1 - Conserved hypothetical protein 2e-1 At1g12630 DNA binding / transcription activator/ transcription factor S.X. H.G.
0.24 22.4 Os03g0307800 AF407010.1 - Enhancer of zeste protein 4e-29 At4g02020 SWN (SWINGER) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.5 98.1 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
8.8 97.8 GSM159263 Drought stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
8.7 97.8 GSM159264 Drought stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
7.6 97.5 GSM159262 Drought stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
5.6 96.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.6 96.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.4 96.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.8 95.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.7 95.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-1 38 Os01g0928400 AK111454.1 - Conserved hypothetical protein 3e+0 At5g43970 TOM22-V (TRANSLOCASE OF OUTER MEMBRANE 22-V) C.G. S.X.
0.01 5e-1 38 Os06g0604500 AK070190.1 - Calcium-binding EF-hand domain containing protein 5e-32 At5g07320 mitochondrial substrate carrier family protein C.G. S.X.
0.01 2e+0 36 Os03g0803200 AK111283.1 - Conserved hypothetical protein 2e-3 At3g28455 CLE25 (CLAVATA3/ESR-RELATED 25) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-5 52 Arabidopsis thaliana At2g31260 817683 APG9 (autophagy 9) Involved in autophagy, the process of vacuolar bulk degradation of cytoplasmic components. Mutant shows accelerated bolting and senescence. - - - C.G. S.X.
0.08 4e-5 52 Glycine max GmaAffx.71488.2.S1_at BI975016 autophagy protein 9 - 2e-17 At2g31260 APG9 (autophagy 9) C.G. S.X.
0.22 1e-101 371 Hordeum vulgare Contig13940_at Contig13940 autophagy protein 9 - 6e-10 At2g31260 APG9 (autophagy 9) C.G. S.X.
0.01 2e+0 36 Populus trichocarpa PtpAffx.80411.1.A1_at DN487715 - - 3e+0 At1g02074 unknown protein C.G. S.X.
0.33 0 662 Triticum aestivum Ta.5613.2.S1_at CA650149 autophagy protein 9 - 6e-10 At2g31260 APG9 (autophagy 9) C.G. S.X.
0.01 3e-2 40 Vitis vinifera 1607439_at CF512630 hypothetical protein LOC100262218 - 9e-18 At1g60170 emb1220 (embryo defective 1220) C.G. S.X.
0.01 7e-1 36 Zea mays Zm.5146.2.S1_at AI586869 Hypothetical protein LOC100194286 - 6e-22 At1g02560 CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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