CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0245500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 81.2 Os03g0245500 AK064707.1 - Curculin-like (mannose-binding) lectin domaincontaining protein 1e+1 At5g53560 CB5-E (CYTOCHROME B5 ISOFORM E) S.X. H.G.
0.83 95.8 Os04g0684300 AK105205.1 - Hypothetical protein 2e+1 Atcg00560 - S.X. H.G.
0.80 94.6 Os04g0423800 AK108989.1 - Peroxidase precursor (EC 1.11.1.7) 3e-3 At1g44970 peroxidase, putative S.X. H.G.
0.71 89.6 Os10g0455100 CA758094 - Eggshell protein family protein 9e-2 At5g39140 unknown protein S.X. H.G.
0.55 73.7 Os07g0193000 9635.m00915 - HIPL1 protein precursor 3e-1 At5g62630 HIPL2 (HIPL2 PROTEIN PRECURSOR) S.X. H.G.
0.47 62.3 Os07g0421300 AK121014.1 - Glycoside hydrolase, family 31 protein 7e-15 At3g23640 HGL1 (heteroglycan glucosidase 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.0 98.4 GSM359918 IR63731 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
12.9 98.4 GSM359911 IR29 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
12.3 98.3 GSM359908 IR29 root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.8 98.3 GSM359915 IR63731 root, control, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.8 98.3 GSM359903 FL478 root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
11.4 98.2 GSM359909 IR29 root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
10.7 98.1 GSM359910 IR29 root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
10.5 98.1 GSM359920 Pokkali root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
10.4 98.1 GSM359904 FL478 root, control, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
10.3 98.1 GSM359917 IR63731 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 3e-26 121 Os10g0155100 AK108770.1 - Curculin-like (mannose-binding) lectin domaincontaining protein 3e+0 At3g04970 zinc finger (DHHC type) family protein C.G. S.X.
0.02 2e-2 42 Os10g0450000 AK063548.1 - Plant protein of unknown function family protein 3e+0 At2g01080 - C.G. S.X.
0.02 8e-2 40 Os04g0669700 9632.m05601 - Phospholipase/Carboxylesterase family protein 1e+0 At2g20430 RIC6 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 6) C.G. S.X.
0.02 3e-1 38 Os07g0147200 9635.m00468 - - 2e-1 At3g20650 mRNA capping enzyme family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+1 32 Arabidopsis thaliana At5g53560 835438 CB5-E (CYTOCHROME B5 ISOFORM E) Encodes a cytochrome b5 isoform that can be reduced by AtCBR, a cytochrome b5 reductase. - - - C.G. S.X.
0.03 1e-2 42 Glycine max Gma.4710.2.S1_a_at CD402482 - - 3e-20 At5g18380 40S ribosomal protein S16 (RPS16C) C.G. S.X.
0.38 9e-122 436 Hordeum vulgare Contig14816_s_at Contig14816 - - 9e+0 At5g07200 YAP169 C.G. S.X.
0.03 6e-2 40 Populus trichocarpa PtpAffx.217016.1.S1_at pmrna32116 hypothetical protein - 3e-1 At1g34030 40S ribosomal protein S18 (RPS18B) C.G. S.X.
0.03 3e-3 44 Triticum aestivum Ta.16217.1.S1_at CA602728 - - 2e+0 At3g22090 unknown protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1611135_at CB983077 hypothetical protein LOC100248430 - 4e-3 At4g09900 MES12 (METHYL ESTERASE 12) C.G. S.X.
0.03 7e-2 38 Zea mays Zm.13480.1.S1_at AY108935.1 gibberellin 20 oxidase 2 - 3e-3 At3g12900 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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