CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0241300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.52 69.6 Os03g0241300 AK072703.1 - Hypothetical protein 1e+0 At3g49010 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) S.X. H.G.
0.71 89.6 Os03g0402800 AK061842.1 - ZIM domain containing protein 2e+0 At1g19180 JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1) S.X. H.G.
0.67 87.2 Os07g0685700 AB074972.1 - Ethylene insensitive 3 family protein 2e-2 At1g56170 NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2) S.X. H.G.
0.47 62.3 Os03g0761100 AK066083.1 - Protein phosphatase 2C-like protein 6e-8 At4g33920 protein phosphatase 2C family protein / PP2C family protein S.X. H.G.
0.46 60.9 Os10g0392400 AK061602.1 - ZIM domain containing protein 5e-1 At5g56320 ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14) S.X. H.G.
0.42 53.9 Os01g0908700 AK120427.1 - Heterogeneous nuclear ribonucleoprotein A2 homolog1 (hnRNP A2(A)) 2e-17 At1g67800 copine-related S.X. H.G.
0.36 44.0 Os03g0187600 AK068057.1 - GRAM domain containing protein 6e-1 At1g28200 FIP1 (FH INTERACTING PROTEIN 1) S.X. H.G.
0.23 21.2 Os04g0584600 AB042550.1 - Calcium dependent protein kinase 3e-44 At2g17290 CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.7 98.5 GSM159184 Y Leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
10.0 98.0 GSM159182 Mature leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
9.6 97.9 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
9.5 97.9 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
9.2 97.9 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
9.1 97.9 GSM159183 Y Leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
8.9 97.8 GSM159181 Mature leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
8.7 97.8 GSM159180 Mature leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
7.8 97.6 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
7.2 97.4 GSM173086 Rice MH63 Control1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-2 44 Os10g0124100 AK120792.1 - Conserved hypothetical protein 4e+0 At5g64650 ribosomal protein L17 family protein C.G. S.X.
0.01 4e-2 42 Os03g0629200 9631.m04145 - - 2e-1 At4g36910 LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2) C.G. S.X.
0.01 7e-1 38 Os12g0208900 9640.m01003 - ZF-HD homeobox protein Cys/His-rich dimerisationregion domain containing protein 4e-2 At1g69600 ZFHD1 (ZINC FINGER HOMEODOMAIN 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Arabidopsis thaliana At3g49010 824062 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1). - - - C.G. S.X.
0.01 5e-1 38 Glycine max Gma.8152.2.A1_at BU548686 - - 5e+0 At5g55790 unknown protein C.G. S.X.
0.17 2e-19 97 Hordeum vulgare Contig10725_at Contig10725 - - 6e-2 At3g49010 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) C.G. S.X.
0.01 5e-1 38 Populus trichocarpa Ptp.3772.1.S1_at BI122009 hypothetical protein - 1e-4 At1g05785 Got1-like family protein C.G. S.X.
0.16 7e-89 329 Triticum aestivum TaAffx.53094.1.S1_at CA696732 - - 2e+1 At4g34770 auxin-responsive family protein C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1619036_at CF212472 hypothetical protein LOC100246551 - 1e+0 At5g27247 unknown protein C.G. S.X.
0.15 8e-22 105 Zea mays Zm.6938.1.A1_at CO522151 hypothetical protein LOC100276436 - 4e+0 At3g58850 PAR2 (PHY RAPIDLY REGULATED 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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