CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0239000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 79.7 Os03g0239000 AK061284.1 - Glycoside hydrolase, family 16 domain containingprotein 2e-4 At1g32170 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) S.X. H.G.
0.71 89.6 Os04g0649200 AK103112.1 - Plant protein of unknown function DUF869 familyprotein 4e-4 At2g23360 transport protein-related S.X. H.G.
0.70 88.4 Os09g0363900 AK072899.1 - Mandelonitrile lyase-like protein 1e-3 At1g72970 HTH (HOTHEAD) S.X. H.G.
0.70 88.4 Os04g0517000 AK101663.1 - Conserved hypothetical protein 3e-2 At1g11700 unknown protein S.X. H.G.
0.67 87.2 Os06g0478600 AK064086.1 - Leucine-rich repeat, plant specific containingprotein 9e-1 At5g01380 transcription factor S.X. H.G.
0.63 82.7 Os01g0756600 AK102373.1 - Protein of unknown function DUF642 family protein 3e-16 At2g34510 - S.X. H.G.
0.56 76.3 Os01g0531400 AK102373.1 - Protein of unknown function DUF642 family protein 3e-16 At2g34510 - S.X. H.G.
0.48 63.7 Os07g0205500 AK103449.1 - Protein of unknown function DUF239 domaincontaining protein 8e-23 At3g13510 unknown protein S.X. H.G.
0.42 53.9 Os05g0406800 AK062566.1 - Leucine-rich repeat, plant specific containingprotein 2e-2 At3g53235 unknown protein S.X. H.G.
0.39 48.3 Os01g0957100 AK122121.1 - Protein kinase domain containing protein 2e+0 At3g45230 hydroxyproline-rich glycoprotein family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
21.8 99.2 GSM99870 TCHW P13_agami control, biological rep1 GSE4438 Expression data from rice under salinity stress
17.5 98.9 GSM99860 TCHW P3_m103 control, biological rep3 GSE4438 Expression data from rice under salinity stress
13.8 98.5 GSM99879 TCHW P21_ir29 control, biological rep3 GSE4438 Expression data from rice under salinity stress
12.9 98.4 GSM99874 TCHW P17_agami salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
12.0 98.3 GSM429984 Rice wild-type panicle rep2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
11.7 98.2 GSM99871 TCHW P14_agami control, biological rep2 GSE4438 Expression data from rice under salinity stress
11.4 98.2 GSM99858 TCHW P1_m103 control, biological rep1 GSE4438 Expression data from rice under salinity stress
10.7 98.1 GSM99878 TCHW P20_ir29 control, biological rep2 GSE4438 Expression data from rice under salinity stress
10.6 98.1 GSM99875 TCHW P18_agami salt stress, biological rep3 GSE4438 Expression data from rice under salinity stress
10.2 98.0 GSM99864 TCHW P7_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 8e-45 182 Os09g0395600 AK122079.1 - Glycoside hydrolase, family 16 domain containingprotein 1e-2 At1g14720 XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2) C.G. S.X.
0.24 1e-28 129 Os02g0696500 AK101915.1 - - 7e-4 At1g32170 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) C.G. S.X.
0.21 1e-22 109 Os03g0854600 AK104577.1 - Glycoside hydrolase, family 16 domain containingprotein 7e-1 At3g50820 PSBO2 (PHOTOSYSTEM II SUBUNIT O-2) C.G. S.X.
0.19 3e-32 141 Os02g0127800 AK073018.1 - Glycoside hydrolase, family 16 domain containingprotein 5e-8 At1g32170 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) C.G. S.X.
0.11 2e-8 61 Os06g0696500 9634.m04702 - Xyloglucan endo-transglycosylase precursor 7e-3 At5g57540 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.07 5e-9 63 Os04g0604900 AK059203.1 - Xyloglucan endotransglycosylase (Fragment) 2e-10 At5g57540 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.06 2e-8 61 Os07g0529700 AK073731.1 - Xyloglucan endo-transglycosylase-like protein 1e-15 At1g11545 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-4 48 Arabidopsis thaliana At1g32170 840109 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) xyloglucan endotransglycosylase-related protein (XTR4) - - - C.G. S.X.
0.03 1e-5 52 Glycine max Gma.4220.2.S1_at AW164216 - - 2e-24 At4g03210 XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9) C.G. S.X.
0.12 5e-12 71 Hordeum vulgare Contig7337_at Contig7337 - - 1e-2 At1g32170 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) C.G. S.X.
0.03 8e-1 36 Populus trichocarpa PtpAffx.140480.1.A1_at CV256758 hypothetical protein - 4e+0 At2g44195 unknown protein C.G. S.X.
0.28 1e-42 174 Triticum aestivum TaAffx.105595.1.S1_at CK208387 - - 6e-4 At1g32170 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) C.G. S.X.
0.09 8e-16 83 Vitis vinifera 1615809_at CB980277 hypothetical protein LOC100267763 - 4e-11 At1g32170 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4) C.G. S.X.
0.12 6e-30 131 Zea mays Zm.14849.1.A1_at AW256200 - - 4e-4 At1g10550 XTH33 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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