CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0233000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os03g0233000 AK069495.1 - Protein of unknown function DUF607 family protein 1e-2 At5g66650 unknown protein S.X. H.G.
0.64 83.4 Os12g0432600 AK108851.1 - Zn-finger, RING domain containing protein 2e+0 At5g47220 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) S.X. H.G.
0.61 81.2 Os10g0370800 AK122082.1 - Exo-1,3-beta-glucanase precursor (EC 3.2.1.58)(Fragment) 6e-1 At2g40340 AP2 domain-containing transcription factor, putative (DRE2B) S.X. H.G.
0.55 73.7 Os02g0562600 AK121163.1 - Mlo-related protein family protein 1e-4 At4g02600 MLO1 S.X. H.G.
0.46 60.9 Os07g0680400 AK110900.1 - DNA-binding WRKY domain containing protein 1e-3 At2g30250 WRKY25 S.X. H.G.
0.28 31.1 Os11g0482200 AK062443.1 - Hypothetical protein 3e-1 At2g34585 unknown protein S.X. H.G.
0.27 27.5 Os01g0916100 CB645166 - Conserved hypothetical protein 4e-2 At1g67570 unknown protein S.X. H.G.
0.24 22.4 Os01g0750500 AK067516.1 - Protein of unknown function DUF814 domaincontaining protein 2e-16 At5g11500 unknown protein S.X. H.G.
0.19 15.1 Os10g0139700 AK067458.1 - Cytochrome P450 family protein 2e-4 At1g64940 CYP89A6 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
89.7 100.0 GSM431927 Root- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
85.4 100.0 GSM431928 Root- -Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
24.4 99.4 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
14.5 98.6 GSM431926 Root- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
9.2 97.9 GSM431929 Root- +Fe-P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
8.8 97.8 GSM431925 Root- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
7.6 97.5 GSM431930 Root- +Fe-P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
7.1 97.4 GSM262005 IAC165, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
4.7 96.4 GSM159271 Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
4.6 96.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 4e-16 87 Os10g0501500 AK058495.1 - Protein of unknown function DUF607 family protein 1e-8 At2g23790 unknown protein C.G. S.X.
0.10 1e-3 46 Os06g0192300 9634.m00877 - - 3e-1 At1g64340 unknown protein C.G. S.X.
0.06 4e-7 57 Os01g0817000 AK072492.1 - Protein of unknown function DUF607 family protein 1e-2 At5g66815 unknown protein C.G. S.X.
0.06 2e-6 56 Os05g0200300 9633.m00975 - - 7e-5 At1g17700 PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1) C.G. S.X.
0.01 2e-2 42 Os06g0731700 9634.m05016 - TPR-like domain containing protein 6e-2 At4g12050 DNA-binding protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-2 42 Arabidopsis thaliana At5g66650 836797 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOA - - - C.G. S.X.
0.02 6e-2 40 Glycine max Gma.1305.1.S1_s_at CD411822 thioredoxin - 9e-2 At5g39950 ATTRX2 (THIOREDOXIN 2) C.G. S.X.
0.12 3e-26 119 Hordeum vulgare Contig5106_at Contig5106 - - 3e-8 At5g66650 unknown protein C.G. S.X.
0.05 6e-2 40 Populus trichocarpa PtpAffx.99728.2.A1_at BP933722 - - 6e-2 At2g23790 unknown protein C.G. S.X.
0.10 6e-23 109 Triticum aestivum TaAffx.130713.1.A1_at CA662715 - - 1e-6 At2g23790 unknown protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1612996_at CD798919 - - 5e-2 At4g11600 ATGPX6 (GLUTATHIONE PEROXIDASE 6) C.G. S.X.
0.11 2e-24 113 Zea mays Zm.14703.2.A1_a_at CF634914 hypothetical protein LOC100194060 - 3e-7 At5g66650 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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