Gene omics information

Query gene ID	Os03g0231800
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os03g0231800	AK065032.1	-	XF1 protein (Squalene monooxygenase, putative)	1e-18	At4g37760	SQE3 (squalene epoxidase 3)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os02g0562700	AB110167.1	-	Gamma hydroxybutyrate dehydrogenase (EC 1.1.1.61)	7e-10	At3g25530	GLYR1 (GLYOXYLATE REDUCTASE 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	Os03g0191100	AK070661.1	-	Mitochondrial substrate carrier family protein	3e-4	At5g64970	mitochondrial substrate carrier family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.31	34.5	Os06g0133800	AK105053.1	-	The start codon is not identified.	1e-49	At2g45290	transketolase, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.25	24.1	Os06g0484600	AK062871.1	-	-	6e+0	At5g10880	tRNA synthetase-related / tRNA ligase-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.23	21.2	Os09g0535000	AK069832.1	-	Triosephosphate isomerase, chloroplast precursor(EC 5.3.1.1) (TIM) (Triose-phosphate isomerase)	5e-15	At2g21170	TIM (TRIOSEPHOSPHATE ISOMERASE)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.1	96.6	GSM421681	XOC, 24 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.5	96.3	GSM421674	XOC, 4 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.5	96.3	GSM421685	XOC, 96 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.4	96.2	GSM421710	MOCK, 2 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.2	96.0	GSM421684	XOC, 96 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.0	95.9	GSM421688	XOO, 2 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.9	95.8	GSM421725	MOCK, 96 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.9	95.8	GSM421724	MOCK, 96 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.9	95.8	GSM421720	MOCK, 24 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
3.9	95.8	GSM421692	XOO, 4 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.58	0	1538	Os03g0231700	AK068401.1	-	Squalene monooxygenase 2 (EC 1.14.99.7)	1e-19	At1g58440	XF1	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	9e-3	44	Os08g0113900	AK062376.1	-	Conserved hypothetical protein	5e+0	At4g24350	phosphorylase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	2e-3	46	Os01g0226700	AK063653.1	-	Uncharacterized plant-specific domain containingprotein	5e-1	At5g61412	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	9e-3	44	Os03g0330000	AK066736.1	-	Glycosyl transferase, family 8 protein	1e+0	At5g46780	VQ motif-containing protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	1e-18	95	Arabidopsis thaliana	At4g37760	829932	SQE3 (squalene epoxidase 3)	F:squalene monooxygenase activity;P:response to jasmonic acid stimulus, sterol biosynthetic process, response to wounding;C:endomembrane system, integral to membrane;BOFMPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	1e-25	119	Glycine max	Gma.7543.1.A1_at	BI968509	-	-	2e-9	At2g22830	SQE2 (squalene epoxidase 2)	C.G.	S.X.	Please select
0.61	0	1400	Hordeum vulgare	Contig5809_at	Contig5809	-	-	2e-14	At1g58440	XF1	C.G.	S.X.	Please select
0.45	2e-70	268	Populus trichocarpa	PtpAffx.205391.1.S1_at	pmrna10677	hypothetical protein	-	3e-68	At1g58440	XF1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.56	0	1342	Triticum aestivum	Ta.7591.1.S1_at	CD872021	-	-	2e-8	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please select
0.07	2e-12	73	Vitis vinifera	1615654_at	CF211462	hypothetical protein LOC100254037	-	7e-14	At1g58440	XF1	C.G.	S.X.	Please select
0.54	0	948	Zea mays	Zm.7407.1.A1_a_at	BM074289	squalene monooxygenase	-	3e-7	At4g37760	SQE3 (squalene epoxidase 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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