CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0225700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os03g0225700 AK101690.1 - Protein kinase domain containing protein 3e-4 At5g66790 protein kinase family protein S.X. H.G.
0.59 78.0 Os07g0533800 AK064277.1 - Peptidase A1, pepsin family protein 1e-5 At5g33340 CDR1 (CONSTITUTIVE DISEASE RESISTANCE 1) S.X. H.G.
0.50 68.0 Os03g0830200 9631.m06064 - Uncharacterized Cys-rich domain containing protein 6e-2 At1g68610 unknown protein S.X. H.G.
0.44 58.1 Os05g0405600 CF321959 - Cytochrome P450 family protein 8e+0 Atcg00560 - S.X. H.G.
0.31 34.5 Os06g0109500 NM_185367.1 - Haloacid dehalogenase-like hydrolase domaincontaining protein 2e+0 At5g23680 sterile alpha motif (SAM) domain-containing protein S.X. H.G.
0.06 3.0 Os04g0450400 AK121979.1 - Zn-finger, RING domain containing protein 8e-4 At1g55530 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
40.4 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.7 98.2 GSM159271 Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
7.8 97.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM278855 KT95-418-non-infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
6.6 97.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7 96.9 GSM159197 Inflorescence (P3, 5 - 10 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 6e-47 190 Os12g0595800 AK121185.1 - Protein kinase domain containing protein 8e-5 At2g23450 protein kinase family protein C.G. S.X.
0.07 1e-26 123 Os01g0136800 AK072170.1 - Protein kinase domain containing protein 2e-2 At5g02070 protein kinase-related C.G. S.X.
0.06 1e-11 73 Os04g0439600 AK109788.1 - Protein kinase domain containing protein 4e-4 At3g13065 SRF4 (STRUBBELIG-RECEPTOR FAMILY 4) C.G. S.X.
0.06 4e-11 71 Os01g0247500 AK065614.1 - Protein kinase domain containing protein 8e-4 At1g49730 protein kinase family protein C.G. S.X.
0.05 3e-24 115 Os05g0550800 9633.m04450 - Protein kinase domain containing protein 2e-3 At1g16110 WAKL6 (wall associated kinase-like 6) C.G. S.X.
0.04 4e-11 71 Os03g0643200 9631.m04258 - EGF-like calcium-binding domain containing protein 8e-18 At1g30300 unknown protein C.G. S.X.
0.03 1e-11 73 Os03g0124200 AK102524.1 - Pto-like serine/threonine kinase 1e-3 At5g54380 THE1 (THESEUS1) C.G. S.X.
0.03 1e-11 73 Os11g0232100 AK105669.1 - Protein kinase domain containing protein 7e-3 At1g72180 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-4 48 Arabidopsis thaliana At5g66790 836812 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA - - - C.G. S.X.
0.02 4e-1 38 Glycine max PsAffx.psMA015xL06f_at PsAffx.psMA015xL06f - - 3e-1 At2g44790 UCC2 (UCLACYANIN 2) C.G. S.X.
0.09 7e-19 95 Hordeum vulgare Contig12629_s_at Contig12629 - - 6e-4 At1g16110 WAKL6 (wall associated kinase-like 6) C.G. S.X.
0.03 3e-2 42 Populus trichocarpa PtpAffx.202084.1.S1_at pmrna4153 hypothetical protein - 4e-6 At5g66790 protein kinase family protein C.G. S.X.
0.10 1e-21 105 Triticum aestivum TaAffx.13368.1.S1_at BG905316 - - 3e+0 At5g54850 unknown protein C.G. S.X.
0.03 9e-5 48 Vitis vinifera 1617287_at AY427196.1 - - 2e-17 At5g10530 lectin protein kinase, putative C.G. S.X.
0.08 4e-14 79 Zea mays Zm.8505.1.A1_at AY107567.1 - - 1e-4 At1g51870 protein kinase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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