CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0224300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os03g0224300 AK100541.1 - Glycosyl transferase, family 20 domain containingprotein 7e-9 At1g68020 ATTPS6 S.X. H.G.
0.60 79.7 Os01g0775600 AK122081.1 - Lissencephaly type-1-like homology motif domaincontaining protein 6e-1 At1g06060 RanBPM-related S.X. H.G.
0.40 51.1 Os07g0546100 AK100024.1 - Conserved hypothetical protein 2e-2 At1g11480 eukaryotic translation initiation factor-related S.X. H.G.
0.29 31.1 Os01g0920400 AK073965.1 - Dynamin family protein 1e-13 At4g33650 DRP3A (DYNAMIN-RELATED PROTEIN 3A) S.X. H.G.
0.14 9.3 Os10g0470900 AK059172.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e-1 At4g31430 unknown protein S.X. H.G.
0.03 1.4 Os06g0300800 AK111728.1 - The start codon is not identified. 2e-6 At3g13290 VCR (VARICOSE-RELATED) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.4 96.8 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
5.0 96.6 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
4.7 96.4 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
4.6 96.3 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
4.1 96.0 GSM409432 9311_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.6 95.5 GSM159187 SAM, biological rep 2 GSE6893 Expression data for reproductive development in rice
3.4 95.2 GSM275411 Azucena root tip_Buckled at the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.4 95.2 GSM409421 Nipponbare_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.3 95.1 GSM409430 9311_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.3 95.1 GSM99879 TCHW P21_ir29 control, biological rep3 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 4e-73 278 Os09g0397300 AK105382.1 - Glycosyl transferase, family 20 domain containingprotein 7e-28 At1g68020 ATTPS6 C.G. S.X.
0.14 1e-45 186 Os02g0790500 AK066691.1 - Glycosyl transferase, family 20 domain containingprotein 3e-11 At1g68020 ATTPS6 C.G. S.X.
0.12 9e-19 97 Os08g0445700 AK072132.1 - Glycosyl transferase, family 20 domain containingprotein 4e-1 At1g68020 ATTPS6 C.G. S.X.
0.10 6e-20 101 Os05g0517200 AK072066.1 - Glycosyl transferase, family 20 domain containingprotein 3e-11 At1g06410 ATTPS7 C.G. S.X.
0.07 6e-17 91 Os01g0749400 AK067731.1 - Glycosyl transferase, family 20 domain containingprotein 2e-12 At1g06410 ATTPS7 C.G. S.X.
0.07 2e-13 79 Os01g0730300 AK109542.1 - Glycosyl transferase, family 20 domain containingprotein 2e-15 At1g70290 ATTPS8 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 7e-9 63 Arabidopsis thaliana At1g68020 843130 ATTPS6 Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain and a trehalose phosphatase (TPP)-like domain. It can complement a yeast mutant lacking both of these activities suggesting that this is a bifunctional enzyme. - - - C.G. S.X.
0.03 4e-5 52 Glycine max PsAffx.C95000045_at PsAffx.C95000045 - - 5e-1 At5g21274 CAM6 (CALMODULIN 6) C.G. S.X.
0.41 7e-143 508 Hordeum vulgare Contig3376_at Contig3376 - - 2e-1 At1g68020 ATTPS6 C.G. S.X.
0.04 5e-4 48 Populus trichocarpa PtpAffx.212767.1.S1_at pmrna24981 hypothetical protein - 1e-16 At1g23870 ATTPS9 C.G. S.X.
0.46 5e-164 579 Triticum aestivum Ta.6470.1.S1_at CA701103 - - 6e-2 At1g68020 ATTPS6 C.G. S.X.
0.01 5e-4 46 Vitis vinifera 1608440_at CF207598 hypothetical protein LOC100252552 - 8e-43 At1g68020 ATTPS6 C.G. S.X.
0.50 0 936 Zea mays Zm.4623.1.S1_x_at AI372203 Hypothetical protein LOC100217143 - 6e-2 At1g68020 ATTPS6 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005992 The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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