Gene omics information

Query gene ID	Os03g0223000
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	89.6	Os03g0223000	AK065199.1	-	Atypical receptor-like kinase MARK	3e-1	At3g17840	RLK902	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	Os08g0524400	9636.m04191	-	Protein of unknown function DUF568 domaincontaining protein	2e+0	At3g44950	glycine-rich protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	Os07g0590800	AK062359.1	-	Hypothetical protein	1e+0	At5g61490	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os07g0604800	AK061294.1	-	Alpha-1,4-glucan-protein synthase [UDP-forming] 1(EC 2.4.1.112) (UDP- glucose:protein transglucosylase 1)(UPTG 1)	3e-105	At5g15650	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.30	32.7	Os01g0282800	AK110638.1	-	Beta tubulin (Fragment)	3e-6	At5g12250	TUB6 (BETA-6 TUBULIN)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.24	22.4	Os03g0647800	AK070243.1	-	Conserved hypothetical protein	2e-4	At3g44150	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.7	97.6	GSM275415	Azucena root tip_Before the wax layer_Rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.7	97.3	GSM275410	Bala root tip_At the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.5	97.2	GSM275409	Bala root tip_At the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
6.1	97.1	GSM262007	IAC165, 11 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
5.7	96.9	GSM99864	TCHW P7_ir29 control, biological rep1	GSE4438	Expression data from rice under salinity stress
5.7	96.9	GSM359921	Pokkali root, control, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
5.7	96.9	GSM429984	Rice wild-type panicle rep2	GSE17194	Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
5.4	96.8	GSM275414	Azucena root tip_Before the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.3	96.7	GSM262003	IAC165, 4 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
5.2	96.7	GSM359924	Pokkali root, salt-treated, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	9e-28	127	Os04g0463000	AK120857.1	-	Protein kinase domain containing protein	3e-1	At1g48480	RKL1	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.15	5e-14	81	Os08g0427600	9636.m03313	-	-	4e+0	At3g17840	RLK902	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.09	2e-16	89	Os01g0608000	D24997	-	Protein kinase domain containing protein	2e-1	At3g08680	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.09	3e-12	75	Os01g0223600	AK110821.1	-	Protein kinase domain containing protein	1e-3	At3g08680	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	7e-13	77	Os12g0145900	AK109461.1	-	Hypothetical protein	9e-18	At1g09960	SUT4 (SUCROSE TRANSPORTER 4)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.06	7e-13	77	Os12g0641400	AB091672.1	-	Sucrose transporter	9e-18	At1g09960	SUT4 (SUCROSE TRANSPORTER 4)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	8e-16	87	Os02g0830700	AK101172.1	-	Leucine-rich repeat, plant specific containingprotein	1e-3	At1g10850	ATP binding / protein binding / protein kinase/ protein serine/threonine kinase	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	3e-12	75	Os05g0522600	AK072881.1	-	Leucine-rich repeat, plant specific containingprotein	3e-2	At1g48480	RKL1	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	38	Arabidopsis thaliana	At3g17840	821053	RLK902	Encodes a receptor-like kinase found at the cell surface of various tissues. Its function remains unknown.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-3	44	Glycine max	GmaAffx.34174.1.S1_at	BF071699	-	-	6e-30	At3g17840	RLK902	C.G.	S.X.	Please select
0.16	3e-9	63	Hordeum vulgare	Contig9077_at	Contig9077	-	-	1e-3	At3g17840	RLK902	C.G.	S.X.	Please select
0.01	7e-3	44	Populus trichocarpa	PtpAffx.113548.1.S1_at	CK101236	heavy metal ATPase	-	1e-1	At3g22120	CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	4e-87	323	Triticum aestivum	Ta.18480.1.S1_x_at	CA615853	-	-	3e-1	At5g07520	GRP18 (GLYCINE-RICH PROTEIN 18)	C.G.	S.X.	Please select
0.05	4e-4	46	Vitis vinifera	1611471_at	CF214980	hypothetical protein LOC100243943	-	6e-12	At1g48480	RKL1	C.G.	S.X.	Please select
0.07	1e-4	48	Zea mays	Zm.1188.1.A1_at	BE512438	-	-	6e-1	At3g08680	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0006468	The process of introducing a phosphate group on to a protein.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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