CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0221200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.40 51.1 Os03g0221200 AK068002.1 - Homocysteine S-methyltransferase 1 (EC 2.1.1.10)(S- methylmethionine:homocysteine methyltransferase 1)(SMM:Hcy S- methyltransferase 1) (ZmHMT-1) 2e-7 At3g25900 HMT-1 S.X. H.G.
0.50 68.0 Os01g0167400 AB051107.1 - Protein synthesis inhibitor II (EC 3.2.2.22)(Ribosome-inactivating protein II) (rRNA N-glycosidase) 7e-1 At5g59220 protein phosphatase 2C, putative / PP2C, putative S.X. H.G.
0.36 44.0 Os05g0593000 AK064253.1 - Conserved hypothetical protein 8e-4 At4g29780 unknown protein S.X. H.G.
0.27 27.5 Os06g0700300 AK099967.1 - Hypothetical protein 7e+0 At5g62770 unknown protein S.X. H.G.
0.14 9.3 Os01g0607200 AK105656.1 - Amino acid permease subfamily protein 1e-21 At2g01170 BAT1 (BIDIRECTIONAL AMINO ACID TRANSPORTER 1) S.X. H.G.
0.06 3.0 Os11g0172100 BU672886 - Pectinesterase family protein 1e+0 At3g19600 phosphoprotein phosphatase S.X. H.G.
0.03 1.4 Os01g0976300 AK111354.1 - Heavy metal transport/detoxification proteindomain containing protein 1e-1 At5g61412 unknown protein S.X. H.G.
0.02 1.0 Os12g0511900 9640.m03182 - - 2e+0 At3g19910 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
53.3 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
34.4 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.2 99.4 GSM154943 Root_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
24.0 99.4 GSM154938 Root_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
14.7 98.6 GSM154944 Root_tZ-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
13.6 98.5 GSM154937 Root_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
11.9 98.3 GSM154942 Root_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice
10.4 98.1 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
7.1 97.4 GSM154831 Root_DMSO-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
7.0 97.4 GSM154829 Root_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 6e-3 44 Os01g0772900 AK073362.1 - - 4e-2 At3g22740 HMT3 C.G. S.X.
0.06 2e-6 56 Os12g0607000 AK065892.1 - Homocysteine S-methyltransferase 2 (EC 2.1.1.10)(S- methylmethionine:homocysteine methyltransferase 2)(SMM:Hcy S- methyltransferase 2) (ZmHMT-2) 5e-5 At3g22740 HMT3 C.G. S.X.
0.04 2e-3 46 Os10g0422200 AK063962.1 - Homocysteine S-methyltransferase 3 (EC 2.1.1.10)(S- methylmethionine:homocysteine methyltransferase 3)(SMM:Hcy S- methyltransferase 3) (ZmHMT-3) 3e+0 At3g63250 HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2) C.G. S.X.
0.01 3e-2 42 Os11g0633800 AK099786.1 - Cyclin-like F-box domain containing protein 3e-3 At4g29460 phospholipase A2 gamma, secretory low molecular weight C.G. S.X.
0.01 1e-1 40 Os03g0776400 AK106237.1 - Conserved hypothetical protein 8e-1 At3g28500 60S acidic ribosomal protein P2 (RPP2C) C.G. S.X.
0.01 1e-1 40 Os06g0589800 AK101039.1 - - 2e-6 At3g24240 leucine-rich repeat transmembrane protein kinase, putative C.G. S.X.
0.01 1e-1 40 Os09g0504000 AK068607.1 - Nucleotide sugar epimerase-like protein(UDP-D-glucuronate 4- epimerase) (EC 5.1.3.6) 7e-11 At1g02000 GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-7 57 Arabidopsis thaliana At3g25900 822186 HMT-1 F:homocysteine S-methyltransferase activity;P:methionine biosynthetic process;C:cellular_component unknown;BOMPFA - - - C.G. S.X.
0.05 8e-8 59 Glycine max Gma.13552.1.A1_at CD400394 - - 2e-4 At3g25900 HMT-1 C.G. S.X.
0.45 6e-151 533 Hordeum vulgare Contig12465_at Contig12465 - - 3e-2 At3g63250 HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2) C.G. S.X.
0.07 2e-8 61 Populus trichocarpa PtpAffx.17806.1.S1_at CV272450 homocysteine s-methyltransferase - 1e-32 At3g25900 HMT-1 C.G. S.X.
0.30 7e-63 242 Triticum aestivum Ta.10164.2.S1_a_at CA601625 - - 2e+1 At5g12190 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.05 9e-1 34 Vitis vinifera 1620325_at CF512180 hypothetical protein LOC100242489 - 4e-23 At3g63250 HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2) C.G. S.X.
0.53 0 702 Zea mays Zm.13424.1.A1_at AF297044.1 homocysteine S-methyltransferase-1 - 2e-7 At3g25900 HMT-1 C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage