Gene omics information

Query gene ID	Os03g0220100
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	93.1	Os03g0220100	AK104714.1	-	Very-long-chain fatty acid condensing enzyme CUT1(Very-long-chain fatty acid condensing enzyme (CUT1)56079-54227)	1e-12	At1g68530	KCS6 (3-KETOACYL-COA SYNTHASE 6)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.46	60.9	Os04g0528300	AK064945.1	-	ABC transporter related domain containing protein	2e-12	At1g17840	WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	Os05g0584300	AK063149.1	-	Harpin-induced 1 domain containing protein	5e-1	At1g01640	speckle-type POZ protein-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.26	25.6	Os03g0850700	AK062083.1	-	Phosphatidylinositol phosphatidylcholine transferprotein sec14 cytosolic-like protein	4e-2	At1g01630	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.25	24.1	Os03g0245700	AK119222.1	-	Senescence-associated protein 15	8e-14	At5g43760	KCS20 (3-KETOACYL-COA SYNTHASE 20)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	3.7	Os02g0720900	AK069691.1	-	Peptidase A1, pepsin family protein	1e+0	At5g41460	fringe-related protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.9	98.3	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
7.9	97.6	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
7.5	97.5	GSM159172	Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9)	GSE6908	Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
7.3	97.5	GSM278853	KT95-418-non-infected, biological rep1	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
7.1	97.4	GSM421680	XOC, 24 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.9	97.3	GSM159173	Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10)	GSE6908	Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
5.6	96.9	GSM421668	XOC, 2 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.6	96.9	GSM421693	XOO, 4 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.6	96.9	GSM421700	XOO, 24 hai - rep2	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.5	96.8	GSM421701	XOO, 24 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	1e-72	276	Os02g0731900	9630.m04890	-	Naringenin-chalcone synthase family protein	1e-2	At1g68530	KCS6 (3-KETOACYL-COA SYNTHASE 6)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.32	8e-40	167	Os11g0591200	AK120567.1	-	Beta-ketoacyl-CoA-synthase	1e-6	At5g43760	KCS20 (3-KETOACYL-COA SYNTHASE 20)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.26	3e-61	238	Os05g0574600	AK070754.1	-	Fatty acid elongase 1-like protein	3e-13	At5g43760	KCS20 (3-KETOACYL-COA SYNTHASE 20)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.21	8e-37	157	Os10g0158100	9638.m00617	-	Senescence-associated protein 15	2e-8	At1g01120	KCS1 (3-KETOACYL-COA SYNTHASE 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.17	1e-35	153	Os10g0416200	AK073016.1	-	Naringenin-chalcone synthase family protein	1e-3	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.16	7e-34	147	Os03g0162800	AK064127.1	-	Beta-ketoacyl-CoA-synthase	3e-3	At5g43760	KCS20 (3-KETOACYL-COA SYNTHASE 20)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.15	5e-38	161	Os06g0263400	9634.m01526	-	Naringenin-chalcone synthase family protein	1e-2	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	1e-12	75	Arabidopsis thaliana	At1g68530	843182	KCS6 (3-KETOACYL-COA SYNTHASE 6)	Encodes KCS6, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	2e-21	105	Glycine max	GmaAffx.73570.1.S1_at	BG316320	-	-	4e-22	At1g01120	KCS1 (3-KETOACYL-COA SYNTHASE 1)	C.G.	S.X.	Please select
0.49	0	1199	Hordeum vulgare	Contig6409_at	Contig6409	-	-	1e-11	At1g68530	KCS6 (3-KETOACYL-COA SYNTHASE 6)	C.G.	S.X.	Please select
0.06	2e-2	42	Populus trichocarpa	PtpAffx.342.1.S1_s_at	CN520102	hypothetical protein	-	2e-25	At1g25450	KCS5 (3-KETOACYL-COA SYNTHASE 5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.48	0	1074	Triticum aestivum	Ta.14341.1.S1_at	AL820835	-	-	1e-5	At1g68530	KCS6 (3-KETOACYL-COA SYNTHASE 6)	C.G.	S.X.	Please select
0.02	1e+0	34	Vitis vinifera	1614378_at	CB004761	-	-	4e-1	At4g39200	40S ribosomal protein S25 (RPS25E)	C.G.	S.X.	Please select
0.25	6e-22	105	Zea mays	Zm.295.1.A1_at	AI065608	fae2 protein	-	2e-20	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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