CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0213600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.47 62.3 Os03g0213600 AK100407.1 - Hypothetical protein 3e-2 At1g01490 heavy-metal-associated domain-containing protein S.X. H.G.
0.77 93.1 Os03g0308600 AK070495.1 - - 7e+0 At5g46430 60S ribosomal protein L32 (RPL32B) S.X. H.G.
0.73 91.1 Os03g0596400 AK107535.1 - Protein of unknown function XH domain containingprotein 4e-1 At3g54826 - S.X. H.G.
0.71 89.6 Os03g0284700 AK069841.1 - Hypothetical protein 2e+0 At5g35490 unknown protein S.X. H.G.
0.71 89.6 Os07g0190600 AK070975.1 - Nucleic acid-binding OB-fold domain containingprotein 3e-1 At3g05490 RALFL22 (ralf-like 22) S.X. H.G.
0.53 71.3 Os12g0207000 AY551912.1 - Transcription factor 9e-21 At3g58780 SHP1 (SHATTERPROOF 1) S.X. H.G.
0.43 55.4 Os01g0212500 AK120776.1 - Conserved hypothetical protein 2e-1 At2g35960 NHL12 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
60.8 99.9 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
59.9 99.9 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
56.5 99.9 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
23.9 99.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.4 99.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM409428 Nipponbare_young panicle 2cm, biological rep4 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
10.8 98.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 2e-45 186 Os10g0408700 AK068095.1 - Protein phosphatase 2C-like domain containingprotein 1e-1 At3g18360 VQ motif-containing protein C.G. S.X.
0.02 6e-2 42 Os10g0411000 CB678786 - - 8e+0 At5g65300 unknown protein C.G. S.X.
0.01 7e-14 81 Os03g0213700 AK067637.1 - Hypothetical protein 2e-12 At1g13770 - C.G. S.X.
0.01 6e-2 42 Os08g0420600 AK073563.1 - Permease 1 1e-15 At5g62890 permease, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-2 42 Arabidopsis thaliana At1g01490 839440 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;MOPBFVA - - - C.G. S.X.
0.01 6e-1 38 Glycine max HgAffx.11468.1.S1_at CB379411 - - 3e-1 At1g59800 cullin-related C.G. S.X.
0.01 5e-2 40 Hordeum vulgare Contig14605_at Contig14605 - - 1e-8 At4g33650 DRP3A (DYNAMIN-RELATED PROTEIN 3A) C.G. S.X.
0.01 2e-1 40 Populus trichocarpa PtpAffx.216290.1.S1_at pmrna30965 hypothetical protein - 5e-1 At1g22470 unknown protein C.G. S.X.
0.05 5e-10 67 Triticum aestivum TaAffx.105723.1.S1_at BJ210047 - - 6e+0 At5g53180 PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) C.G. S.X.
0.01 5e-1 36 Vitis vinifera 1621160_at CF208890 - - 2e-1 At5g24250 unknown protein C.G. S.X.
0.01 2e-1 38 Zea mays Zm.2197.1.S1_a_at AF007785.1 cystathionine gamma-synthase1 - 6e-5 At3g01120 MTO1 (METHIONINE OVERACCUMULATION 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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