CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0212300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os03g0212300 AK070861.1 - Transcriptional factor B3 family protein 7e-1 At1g64370 unknown protein S.X. H.G.
0.83 95.8 Os07g0507500 AK100690.1 - Hypothetical protein 3e-1 At2g01080 - S.X. H.G.
0.60 79.7 Os02g0753900 9630.m05091 - Conserved hypothetical protein 6e-2 At5g15820 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.59 78.0 Os05g0203800 AK111723.1 - MADS box protein 4e-20 At3g58780 SHP1 (SHATTERPROOF 1) S.X. H.G.
0.50 68.0 Os07g0188000 AK100285.1 - Argonaute protein 3e-5 At2g27880 AGO5 (ARGONAUTE 5) S.X. H.G.
0.50 68.0 Os01g0122000 AK109465.1 - TRAF-like domain containing protein 8e-1 At5g18748 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
93.7 100.0 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
90.4 100.0 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
82.6 100.0 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
47.7 99.9 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
41.9 99.9 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
35.6 99.8 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
2.9 94.5 GSM159208 Seed (S1, 0 - 2 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
2.4 93.3 GSM159209 Seed (S1, 0 - 2 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
1.8 91.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
1.8 91.1 GSM159207 Seed (S1, 0 - 2 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-4 48 Os11g0257800 CB629785 - Conserved hypothetical protein 6e+0 At5g13250 unknown protein C.G. S.X.
0.02 1e-3 46 Os09g0487600 9637.m02770 - Glycoside hydrolase, family 28 protein 8e-4 At3g57790 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.02 2e-2 42 Os10g0520100 NM_197387.1 - Cyclin-like F-box domain containing protein 6e-1 At5g55570 unknown protein C.G. S.X.
0.01 6e-3 44 Os09g0518500 AK100826.1 - - 1e-3 At2g31820 ankyrin repeat family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-1 36 Arabidopsis thaliana At1g64370 842744 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBP - - - C.G. S.X.
0.03 6e-2 40 Glycine max PsAffx.C22000064_at PsAffx.C22000064 - - 1e-3 At5g45130 RHA1 (RAB HOMOLOG 1) C.G. S.X.
0.17 4e-13 75 Hordeum vulgare Contig8003_at Contig8003 - - 2e+0 At5g22100 RNA cyclase family protein C.G. S.X.
0.02 2e-1 38 Populus trichocarpa PtpAffx.37748.1.A1_at CV240667 hypothetical protein - 6e+0 At3g10990 F-box family protein C.G. S.X.
0.19 9e-19 95 Triticum aestivum Ta.9525.2.S1_x_at BJ252442 - - 6e-1 At4g29410 60S ribosomal protein L28 (RPL28C) C.G. S.X.
0.03 3e-3 42 Vitis vinifera 1617166_s_at CA808041 ripening-related protein-like - 4e-1 At1g54410 dehydrin family protein C.G. S.X.
0.02 5e-3 42 Zea mays Zm.16929.1.S1_at AW055615 dehydrin 13 - 9e-2 At1g64370 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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