CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0208500

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.63 82.7 Os03g0208500 AK065481.1 - Integral membrane protein 1e-12 At5g67330 ATNRAMP4 S.X. H.G.
0.18 13.7 Os01g0886000 AK106349.1 - Protein of unknown function DUF179 family protein 7e-1 At3g24100 - S.X. H.G.
0.17 12.6 Os08g0179900 AK072550.1 - Conserved hypothetical protein 2e+0 At4g01510 ARV2 S.X. H.G.
0.12 7.2 Os03g0728100 AK068717.1 - Heat shock protein DnaJ, N-terminal domaincontaining protein 1e-5 At4g07990 DNAJ heat shock N-terminal domain-containing protein S.X. H.G.
0.10 5.7 Os01g0976700 AK100571.1 - Protein phosphatase 2C-like protein 1e+0 At5g06750 protein phosphatase 2C family protein / PP2C family protein S.X. H.G.
0.10 5.7 Os12g0612100 AK101614.1 - Hypothetical protein 9e-1 At5g38290 peptidyl-tRNA hydrolase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.2 97.4 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
5.8 97.0 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
5.4 96.8 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
4.3 96.1 GSM207562 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
4.1 96.0 GSM207564 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
4.1 96.0 GSM302923 seedling_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
4.1 96.0 GSM375647 Taichung 65_shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
3.8 95.7 GSM375648 Taichung 65_shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
3.8 95.7 GSM207567 Mudanjiang8 wild type control rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
3.6 95.5 GSM375649 Taichung 65_shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 5e-66 254 Os12g0581600 AK071485.1 - Integral membrane protein 7e-8 At1g47240 NRAMP2 C.G. S.X.
0.16 1e-54 216 Os03g0607400 AK069904.1 - Natural resistance-associated macrophage proteinfamily protein 1e-9 At1g47240 NRAMP2 C.G. S.X.
0.07 8e-34 147 Os03g0208400 9631.m01014 - Hypothetical protein 2e-1 At5g50840 - C.G. S.X.
0.04 2e-16 89 Os01g0732900 NM_191548.1 - Hypothetical protein 5e+0 At2g35100 ARAD1 (ARABINAN DEFICIENT 1) C.G. S.X.
0.04 3e-2 42 Os01g0941000 NM_189710.1 - - 4e-5 At5g46780 VQ motif-containing protein C.G. S.X.
0.01 3e-2 42 Os03g0760000 AK107231.1 - Cytochrome P450 family protein 2e-1 At5g10610 CYP81K1 C.G. S.X.
0.01 1e-1 40 Os08g0162600 AK060121.1 - Rubredoxin-type Fe(Cys)4 protein family protein 6e-22 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-12 75 Arabidopsis thaliana At5g67330 836868 ATNRAMP4 Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp3, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination. - - - C.G. S.X.
0.15 7e-12 73 Glycine max Gma.470.1.S1_at AY169405.1 ferrous ion membrane transport protein DMT1 - 2e-17 At2g23150 NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3) C.G. S.X.
0.31 3e-110 398 Hordeum vulgare Contig24105_at Contig24105 - - 9e-2 At2g23150 NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3) C.G. S.X.
0.07 7e-15 83 Populus trichocarpa PtpAffx.218535.1.S1_at pmrna34191 nramp transporter - 4e-64 At2g23150 NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3) C.G. S.X.
0.28 2e-116 420 Triticum aestivum Ta.13247.1.S1_a_at CK198318 - - 9e-9 At1g47240 NRAMP2 C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1616105_at CA809406 hypothetical protein LOC100266507 - 6e-2 At3g09700 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.55 0 1098 Zea mays Zm.13647.1.S1_at AY107242.1 metal transporter Nramp3 - 3e-12 At5g67330 ATNRAMP4 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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