Gene omics information

Query gene ID	Os03g0192700
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.97	99.9	Os03g0192700	AB012107.1	-	Myo-inositol-1-phosphate synthase	9e-100	At4g39800	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	Os02g0591900	AK060750.1	-	Conserved hypothetical protein	2e-5	At2g32850	protein kinase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.54	71.9	Os05g0582400	AK069254.1	-	Blast and wounding induced mitogen-activatedprotein kinase	6e-43	At1g53510	ATMPK18	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.48	63.7	Os02g0274900	AK073967.1	-	General substrate transporter family protein	2e-14	At1g79820	SGB1 (SUPPRESSOR OF G PROTEIN BETA1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.47	62.3	Os08g0157600	AY452478.1	-	Myb, DNA-binding domain containing protein	5e-31	At1g01060	LHY (LATE ELONGATED HYPOCOTYL)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.47	62.3	Os07g0546000	AK065871.1	-	Isopentenyl pyrophosphate:dimethyllallylpyrophosphate isomerase (EC 5.3.3.2) (Fragment)	1e-32	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.46	60.9	Os08g0178800	CA766768	-	Hypothetical protein	2e+0	At1g54775	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.45	58.8	Os03g0191100	AK070661.1	-	Mitochondrial substrate carrier family protein	3e-4	At5g64970	mitochondrial substrate carrier family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.45	58.8	Os08g0144000	AK073681.1	-	Zn-finger, CCHC type domain containing protein	3e-3	At3g16350	myb family transcription factor	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os01g0171800	AK067987.1	-	Conserved hypothetical protein	2e-1	At5g62960	unknown protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.0	98.2	GSM174887	D FR13 3 dpi rep 2 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
10.7	98.1	GSM174885	B FR13 3 dpi rep 1 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
8.7	97.8	GSM195228	Embryo	GSE7951	Genome-wide gene expression profiling of rice stigma
8.3	97.7	GSM421726	MOCK, 96 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
7.6	97.5	GSM421723	MOCK, 96 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
7.4	97.5	GSM421682	XOC, 24 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
7.0	97.4	GSM421681	XOC, 24 hai - rep3	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.9	97.3	GSM421686	XOC, 96 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.9	97.3	GSM421722	MOCK, 24 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
6.6	97.3	GSM421703	XOO, 96 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.61	0	983	Os10g0369900	AK069323.1	-	Myo-inositol-1-phosphate synthase	5e-49	At5g10170	MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.02	1e-1	40	Os01g0288301	NM_183574.1	-	-	3e+0	At5g26720	unknown protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e-1	40	Os01g0533000	AU175102	-	-	3e+0	At1g17145	protein binding / zinc ion binding	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	5e-1	38	Os04g0530100	AK107184.1	-	Beta-expansin 3 precursor (AtEXPB3) (At-EXPB3)(Ath-ExpBeta-1.6)	1e-2	At2g20750	ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	9e-100	365	Arabidopsis thaliana	At4g39800	830139	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	** Referred to as MIPS2 in Mitsuhashi et al 2008. myo-inositol-1-phosphate synthase isoform 1.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.51	2e-117	424	Glycine max	Gma.15564.1.S1_at	AF293970.1	Myo-inositol-1-phosphate synthase	-	2e-100	At5g10170	MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3)	C.G.	S.X.	Please select
0.69	0	1873	Hordeum vulgare	Contig3592_at	Contig3592	-	-	4e-83	At4g39800	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	C.G.	S.X.	Please select
0.50	7e-95	349	Populus trichocarpa	Ptp.858.1.S1_at	CV256345	hypothetical protein	-	4e-138	At2g22240	MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.67	0	1883	Triticum aestivum	Ta.28254.1.S1_s_at	BJ274136	-	-	3e-115	At4g39800	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	C.G.	S.X.	Please select
0.50	5e-114	410	Vitis vinifera	1613429_s_at	CB974870	hypothetical protein LOC100259515	-	0	At2g22240	MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2)	C.G.	S.X.	Please select
0.64	0	952	Zea mays	Zm.2986.1.A1_at	AF056326.1	low phytic acid1	-	4e-105	At4g39800	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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