Gene omics information

Query gene ID	Os03g0191900
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.2	Os03g0191900	9631.m00866	-	AP2 domain family transcription factor homolog(AP2 domain transcription factor) (ABI4:abscisicacid-insensitive 4 ) (ABI4)	4e-2	At1g71130	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.48	63.7	Os09g0455300	AK070458.1	-	Symbiotic ammonium transporter	1e-5	At3g50330	HEC2 (HECATE 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.46	60.9	Os07g0686600	AK108527.1	-	VQ domain containing protein	6e-1	At2g40220	ABI4 (ABA INSENSITIVE 4)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.43	55.4	Os03g0386000	AK072984.1	-	WD domain protein-like	3e-5	At1g78070	-	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.27	27.5	Os01g0846300	AK065949.1	-	Protein phpsphatase 2C (PP2C) (EC 3.1.3.16)	9e-1	At5g59220	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.18	13.7	Os05g0499800	AK103146.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	2e-2	At1g30530	UGT78D1 (UDP-GLUCOSYL TRANSFERASE 78D1)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.15	10.3	Os03g0125100	9631.m00248	-	Beta-carotene hydroxylase	1e-11	At5g52570	BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.0	99.7	GSM278852	KT95-418-RSV infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
28.4	99.6	GSM278851	KT95-418-RSV infected,biological rep2	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
27.7	99.6	GSM278849	WuYun3-non-infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
27.6	99.6	GSM278844	WuYun3-RSV infected, biological rep1	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
26.5	99.5	GSM278855	KT95-418-non-infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
24.6	99.4	GSM278846	WuYun3-RSV infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
22.1	99.3	GSM278845	WuYun3-RSV infected, biological rep2	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
21.4	99.2	GSM278850	KT95-418-RSV infected, biological rep1	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
9.0	97.8	GSM278848	WuYun3-non-infected, biological rep2	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
7.6	97.5	GSM159182	Mature leaf, biological rep 3	GSE6893	Expression data for reproductive development in rice

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	9e-48	192	Os02g0752800	AK105877.1	-	Dehydration responsive element binding protein 2B(DREB2B protein)	7e-5	At2g22200	AP2 domain-containing transcription factor	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.15	1e-49	198	Os08g0408500	AK068312.1	-	Pathogenesis-related transcriptional factor andERF domain containing protein	2e-1	At1g53170	ERF8	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.14	9e-45	182	Os09g0369000	AK070758.1	-	AP2 domain transcription factor RAP2.3 (Related toAP2 protein 3) (Cadmium-induced protein AS30)	3e-4	At1g71130	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-2	40	Arabidopsis thaliana	At1g71130	843453	AP2 domain-containing transcription factor, putative	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	1e-18	95	Glycine max	Gma.1187.1.S1_at	AW350683	-	-	9e-9	At1g36060	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.34	2e-24	113	Hordeum vulgare	Contig18390_at	Contig18390	-	-	4e+0	At1g53110	-	C.G.	S.X.	Please select
0.03	6e-2	40	Populus trichocarpa	PtpAffx.201115.1.S1_at	pmrna2198	AP2/ERF domain-containing transcription factor	-	9e-21	At1g80580	ethylene-responsive element-binding family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	1e-27	125	Triticum aestivum	Ta.3721.1.S1_x_at	CD928643	-	-	2e+0	At4g27950	CRF4 (CYTOKININ RESPONSE FACTOR 4)	C.G.	S.X.	Please select
0.04	5e-5	48	Vitis vinifera	1611910_s_at	AY395745.1	similar to putative ethylene response factor ERF3b	-	9e-14	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please select
0.23	4e-28	125	Zea mays	Zm.13842.1.A1_at	AY104042.1	-	-	1e-1	At1g06160	ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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