CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0191400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.82 95.0 Os03g0191400 9631.m00863 - Ras GTPase family protein 3e-21 At4g39890 AtRABH1c (Arabidopsis Rab GTPase homolog H1c) S.X. H.G.
0.50 68.0 Os04g0503600 AK068552.1 - Protein kinase domain containing protein 2e+0 At5g58940 CRCK1 (CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1) S.X. H.G.
0.46 60.9 Os11g0703400 AB117996.1 - Snf7 family protein 2e-19 At2g06530 VPS2.1 S.X. H.G.
0.44 58.1 Os04g0451900 9632.m03567 - Protein phosphatase 2C-like domain containingprotein 6e-11 At1g22280 protein phosphatase 2C, putative / PP2C, putative S.X. H.G.
0.39 48.3 Os02g0690200 AK070868.1 - Conserved hypothetical protein 4e-1 At4g31150 endonuclease V family protein S.X. H.G.
0.35 41.7 Os02g0475300 AK120516.1 - Membrane attack complexcomponent/perforin/complement C9 family protein 5e+0 At5g08590 SNRK2.1 (SNF1-RELATED PROTEIN KINASE 2.1) S.X. H.G.
0.33 38.8 Os02g0166600 AK069371.1 - Conserved hypothetical protein 5e-2 At5g39540 - S.X. H.G.
0.33 38.8 Os02g0173800 AK069063.1 - Eukaryotic protein of unknown function DUF284family protein 2e-8 At1g16360 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein S.X. H.G.
0.27 27.5 Os04g0452000 BM422041 - Protein phosphatase type 2C 2e-10 At1g22280 protein phosphatase 2C, putative / PP2C, putative S.X. H.G.
0.23 21.2 Os02g0606800 AK073760.1 - Isochorismatase hydrolase family protein 5e-1 At1g69080 universal stress protein (USP) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.0 97.8 GSM174889 H FR13 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
7.6 97.5 GSM154831 Root_DMSO-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
7.3 97.5 GSM154832 Root_DMSO-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
7.2 97.4 GSM154948 Leaf_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
6.9 97.3 GSM154949 Leaf_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
6.7 97.3 GSM154829 Root_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
6.6 97.3 GSM154943 Root_tZ-treatment_120min_replicate 2 GSE6719 Cytokinin responsive genes in rice
6.1 97.1 GSM195226 Root GSE7951 Genome-wide gene expression profiling of rice stigma
6.1 97.1 GSM154938 Root_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
6.0 97.0 GSM154953 Leaf_DMSO-treatment_120min_replicate 3 GSE6719 Cytokinin responsive genes in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 7e-42 173 Os07g0496000 AK111986.1 - Nt-rab6 protein 9e-68 At2g44610 RAB6A C.G. S.X.
0.03 3e-1 38 Os01g0153200 9629.m00526 - Ribosomal protein S8 family protein 7e-3 At1g63330 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.02 1e-3 46 Os03g0666500 AK061203.1 - Ras-related protein RHA1 9e-40 At5g45130 RHA1 (RAB HOMOLOG 1) C.G. S.X.
0.02 2e-2 42 Os03g0823700 AK061336.1 - Ras-related protein Rab11C 1e-42 At1g07410 ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) C.G. S.X.
0.02 2e-2 42 Os05g0382600 AK060054.1 - Annexin family protein 6e-1 At5g10230 ANNAT7 (ANNEXIN ARABIDOPSIS 7) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 3e-21 103 Arabidopsis thaliana At4g39890 830148 AtRABH1c (Arabidopsis Rab GTPase homolog H1c) F:protein binding, GTP binding;P:protein transport, small GTPase mediated signal transduction;C:endomembrane system;MOFPBVA - - - C.G. S.X.
0.17 3e-12 73 Glycine max Gma.16367.2.S1_a_at CA782572 - - 8e-41 At2g44610 RAB6A C.G. S.X.
0.30 4e-40 165 Hordeum vulgare Contig7349_at Contig7349 - - 1e-66 At2g44610 RAB6A C.G. S.X.
0.25 2e-7 57 Populus trichocarpa PtpAffx.205177.1.S1_at pmrna10251 hypothetical protein - 4e-93 At5g10260 AtRABH1e (Arabidopsis Rab GTPase homolog H1e) C.G. S.X.
0.48 1e-125 450 Triticum aestivum TaAffx.10744.1.S1_at CD899249 - - 5e-7 At2g44610 RAB6A C.G. S.X.
0.24 3e-15 81 Vitis vinifera 1621785_at CF213480 hypothetical protein LOC100242004 - 2e-101 At2g44610 RAB6A C.G. S.X.
0.32 8e-29 127 Zea mays Zm.8122.1.A1_at BM736458 hypothetical protein LOC100274535 - 4e-73 At2g44610 RAB6A C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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