CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0189400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.92 99.1 Os03g0189400 AK067720.1 - Alcohol dehydrogenase ADH 4e-2 At5g42250 alcohol dehydrogenase, putative S.X. H.G.
0.36 44.0 Os05g0163700 AK071561.1 - Acyl-CoA dehydrogenase, N-terminal domaincontaining protein 2e-13 At3g51840 ACX4 (ACYL-COA OXIDASE 4) S.X. H.G.
0.35 41.7 Os03g0843100 AK111499.1 - Ras-related protein Rab-11B 4e-11 At1g09630 ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) S.X. H.G.
0.33 38.8 Os03g0582200 AK099288.1 - SCAMP family protein 1e-9 At2g20840 secretory carrier membrane protein (SCAMP) family protein S.X. H.G.
0.33 38.8 Os06g0354500 AK066934.1 - Acyl-CoA oxidase ACX3 2e-15 At1g06310 ACX6 (ACYL-COA OXIDASE 6) S.X. H.G.
0.32 36.3 Os12g0596800 AK065760.1 - Ubiquitin interacting motif domain containingprotein 1e-12 At4g36860 zinc ion binding S.X. H.G.
0.31 34.5 Os12g0623500 CB629004 - Cationic amino acid transporter-like protein 3e-17 At1g58030 CAT2 (CATIONIC AMINO ACID TRANSPORTER 2) S.X. H.G.
0.29 31.1 Os11g0186200 BI806335 - Aldehyde dehydrogenase (EC 1.2.1.3) 1e+0 At1g01520 myb family transcription factor S.X. H.G.
0.29 31.1 Os05g0475300 AK065069.1 - VHS domain containing protein 1e-6 At5g01760 VHS domain-containing protein / GAT domain-containing protein S.X. H.G.
0.28 31.1 Os01g0796400 AK060287.1 - - 2e-11 At3g15290 3-hydroxybutyryl-CoA dehydrogenase, putative S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.4 98.5 GSM159182 Mature leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
9.6 97.9 GSM173089 Rice MH63 Control3 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
8.4 97.7 GSM173093 Rice OsSRT1 RNAi transgenic line LM2 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
8.1 97.7 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
8.1 97.7 GSM173080 Rice MH63 Control2 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
7.5 97.5 GSM359908 IR29 root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
7.5 97.5 GSM159180 Mature leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
7.3 97.5 GSM359909 IR29 root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
7.1 97.4 GSM359915 IR63731 root, control, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
6.6 97.3 GSM159183 Y Leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 1e-16 89 Os03g0189600 AK066331.1 - Alcohol dehydrogenase 2e-1 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) C.G. S.X.
0.14 1e-10 69 Os07g0621800 AK071704.1 - Zinc-containing alcohol dehydrogenase superfamilyprotein 7e-1 At5g43940 HOT5 (sensitive to hot temperatures 5) C.G. S.X.
0.09 4e-6 52 Os11g0210300 AK073964.1 - Alcohol dehydrogenase 1 2e-30 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) C.G. S.X.
0.03 6e-6 54 Os11g0210600 AK101288.1 - The start codon is not identified. 7e-10 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) C.G. S.X.
0.03 4e-6 52 Os12g0138100 AK105237.1 - GRAS transcription factor domain containingprotein 1e-12 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-2 40 Arabidopsis thaliana At5g42250 834230 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:unknown;BOPFMAV - - - C.G. S.X.
0.02 2e-1 38 Glycine max PsAffx.CL2529Contig1_at PsAffx.CL2529Contig1 - - 8e+0 At5g42635 glycine-rich protein C.G. S.X.
0.31 2e-85 315 Hordeum vulgare Contig13799_at Contig13799 - - 2e-5 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) C.G. S.X.
0.02 2e-2 42 Populus trichocarpa PtpAffx.58733.1.A1_at CK093090 hypothetical protein - 1e+0 At4g22110 alcohol dehydrogenase, putative C.G. S.X.
0.18 2e-38 161 Triticum aestivum TaAffx.108935.1.S1_at CA678256 - - 4e+0 At5g23040 CDF1 (CELL GROWTH DEFECT FACTOR 1) C.G. S.X.
0.03 3e+0 32 Vitis vinifera 1619873_at CF404612 hypothetical protein LOC100264420 - 2e-9 At5g42250 alcohol dehydrogenase, putative C.G. S.X.
0.32 2e-24 113 Zea mays Zm.4033.1.A1_at CF636055 hypothetical protein LOC100273217 - 5e-2 At5g43940 HOT5 (sensitive to hot temperatures 5) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage