CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0181100

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os03g0181100 AK120087.1 - ZIM domain containing protein 2e+0 At3g59370 unknown protein S.X. H.G.
0.61 81.2 Os10g0391400 AK107854.1 - ZIM domain containing protein 2e+0 At3g01700 AGP11 S.X. H.G.
0.61 81.2 Os08g0474000 AK062882.1 - AP2 domain containing protein RAP2.6 (Fragment) 1e-4 At1g22985 AP2 domain-containing transcription factor, putative S.X. H.G.
0.50 68.0 Os06g0649000 AK106282.1 - The start codon is not identified. 7e-4 At1g80840 WRKY40 S.X. H.G.
0.35 41.7 Os03g0676400 AK109228.1 - VQ domain containing protein 1e+0 At5g55570 unknown protein S.X. H.G.
0.29 31.1 Os01g0186900 AK120573.1 - Hypothetical protein 4e-1 At3g04310 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.7 99.4 GSM159182 Mature leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
22.2 99.3 GSM159181 Mature leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
21.0 99.2 GSM159180 Mature leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
15.6 98.7 GSM159269 Cold stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
14.0 98.5 GSM159189 Young inflorescence (P1, upto 3 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
13.9 98.5 GSM159270 Cold stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
11.9 98.3 GSM159268 Cold stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
9.8 98.0 GSM159198 Inflorescence (P4, 10 - 15 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
9.5 97.9 GSM159191 Young inflorescence (P1, upto 3 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
9.3 97.9 GSM159197 Inflorescence (P3, 5 - 10 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 7e-8 59 Os10g0391400 AK107854.1 - ZIM domain containing protein 2e+0 At3g01700 AGP11 C.G. S.X.
0.11 1e-3 46 Os03g0180900 AK073589.1 - ZIM domain containing protein 1e-1 At3g22275 unknown protein C.G. S.X.
0.09 7e-8 59 Os03g0180800 AK070649.1 - ZIM domain containing protein 5e-1 At2g35960 NHL12 C.G. S.X.
0.07 1e-6 56 Os10g0392400 AK061602.1 - ZIM domain containing protein 5e-1 At5g56320 ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14) C.G. S.X.
0.04 2e-2 42 Os07g0615200 AK065604.1 - ZIM domain containing protein 7e-1 At1g19180 JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Arabidopsis thaliana At3g59370 825106 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA - - - C.G. S.X.
0.02 7e-1 36 Glycine max PsAffx.CL385Contig2_s_at PsAffx.CL385Contig2 - - 4e+0 At2g20875 EPF1 (EPIDERMAL PATTERNING FACTOR 1) C.G. S.X.
0.25 1e-21 103 Hordeum vulgare Contig11225_at Contig11225 - - 7e+0 At5g13220 JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10) C.G. S.X.
0.02 1e+1 32 Populus trichocarpa PtpAffx.82338.1.A1_at CV250838 - - 9e-1 At1g33910 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein C.G. S.X.
0.21 4e-23 109 Triticum aestivum Ta.30507.1.S1_a_at CK214499 - - 2e+0 At5g35230 unknown protein C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1615170_s_at CB005173 hypothetical protein LOC100258503 - 6e+0 At3g20750 zinc finger (GATA type) family protein C.G. S.X.
0.19 4e-12 71 Zea mays Zm.10850.1.S1_at AY106263.1 ZIM motif family protein - 8e-1 At5g40420 OLEO2 (OLEOSIN 2) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage