CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0180800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.74 91.4 Os03g0180800 AK070649.1 - ZIM domain containing protein 5e-1 At2g35960 NHL12 S.X. H.G.
0.74 91.4 Os06g0649000 AK106282.1 - The start codon is not identified. 7e-4 At1g80840 WRKY40 S.X. H.G.
0.74 91.4 Os08g0474000 AK062882.1 - AP2 domain containing protein RAP2.6 (Fragment) 1e-4 At1g22985 AP2 domain-containing transcription factor, putative S.X. H.G.
0.73 91.1 Os03g0181100 AK120087.1 - ZIM domain containing protein 2e+0 At3g59370 unknown protein S.X. H.G.
0.72 89.8 Os10g0391400 AK107854.1 - ZIM domain containing protein 2e+0 At3g01700 AGP11 S.X. H.G.
0.60 79.7 Os03g0676400 AK109228.1 - VQ domain containing protein 1e+0 At5g55570 unknown protein S.X. H.G.
0.58 77.0 Os04g0301500 AB040744.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 7e-1 At3g02670 proline-rich family protein S.X. H.G.
0.58 77.0 Os03g0180900 AK073589.1 - ZIM domain containing protein 1e-1 At3g22275 unknown protein S.X. H.G.
0.50 68.0 Os02g0165100 AK066645.1 - Protein kinase domain containing protein 2e-4 At2g35620 FEI2 (FEI 2) S.X. H.G.
0.48 63.7 Os01g0186900 AK120573.1 - Hypothetical protein 4e-1 At3g04310 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.8 99.2 GSM278846 WuYun3-RSV infected, biological rep3 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
18.2 98.9 GSM159270 Cold stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
16.2 98.8 GSM159269 Cold stress, biological rep 2 GSE6901 Expression data for stress treatment in rice seedlings
15.7 98.7 GSM159268 Cold stress, biological rep 1 GSE6901 Expression data for stress treatment in rice seedlings
14.7 98.6 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
13.1 98.4 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
11.6 98.2 GSM278850 KT95-418-RSV infected, biological rep1 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
11.4 98.2 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
11.0 98.2 GSM159209 Seed (S1, 0 - 2 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
11.0 98.2 GSM278845 WuYun3-RSV infected, biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 1e-6 56 Os03g0181100 AK120087.1 - ZIM domain containing protein 2e+0 At3g59370 unknown protein C.G. S.X.
0.07 7e-8 59 Os10g0392400 AK061602.1 - ZIM domain containing protein 5e-1 At5g56320 ATEXPA14 (ARABIDOPSIS THALIANA EXPANSIN A14) C.G. S.X.
0.07 7e-5 50 Os10g0391400 AK107854.1 - ZIM domain containing protein 2e+0 At3g01700 AGP11 C.G. S.X.
0.04 1e-6 56 Os03g0180900 AK073589.1 - ZIM domain containing protein 1e-1 At3g22275 unknown protein C.G. S.X.
0.03 1e-3 46 Os11g0249400 9639.m01325 - Glycoside hydrolase, family 28 protein 2e-7 At3g57510 ADPG1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-1 36 Arabidopsis thaliana At2g35960 818169 NHL12 Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine. - - - C.G. S.X.
0.02 7e-1 36 Glycine max HgAffx.16785.1.S1_at CB375766 - - 6e-2 At4g17440 unknown protein C.G. S.X.
0.08 1e-6 54 Hordeum vulgare Contig4814_at Contig4814 - - 1e+0 At3g60530 zinc finger (GATA type) family protein C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.218003.1.S1_at pmrna33499 hypothetical protein - 6e+0 At5g59320 LTP3 (LIPID TRANSFER PROTEIN 3) C.G. S.X.
0.07 1e-7 57 Triticum aestivum TaAffx.132281.2.S1_x_at CK212051 - - 6e+0 At1g70700 TIFY7 C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1614798_at CF568817 - - 2e-1 At5g21050 - C.G. S.X.
0.06 6e-5 48 Zea mays Zm.8525.1.A1_at BM074538 pnFL-2 - 1e-1 At3g22275 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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