CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0169900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os03g0169900 AK063222.1 - Conserved hypothetical protein 4e-1 At5g64850 unknown protein S.X. H.G.
0.73 91.1 Os10g0363600 AK111523.1 - Cyclin-like F-box domain containing protein 4e-3 At1g22040 kelch repeat-containing F-box family protein S.X. H.G.
0.59 78.0 Os10g0502500 AK061824.1 - Cytochrome b5 domain containing protein 4e-14 At3g48890 ATMP2 S.X. H.G.
0.57 77.0 Os02g0830100 AK065077.1 - Oligopeptidase A 7e-24 At5g65620 peptidase M3 family protein / thimet oligopeptidase family protein S.X. H.G.
0.44 58.1 Os08g0562700 AK066773.1 - Aminopeptidase N 4e-44 At1g63770 peptidase M1 family protein S.X. H.G.
0.40 51.1 Os06g0728500 AK099928.1 - Hypothetical protein 2e-2 At1g70190 ribosomal protein L12 family protein S.X. H.G.
0.33 38.8 Os02g0773300 AK071811.1 - Pyridoxal phosphate-dependent deaminase familyprotein 3e-12 At1g48420 D-CDES (D-CYSTEINE DESULFHYDRASE) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.2 97.1 GSM154949 Leaf_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
6.1 97.1 GSM173091 Rice OsSRT1 RNAi transgenic line LM1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
5.7 96.9 GSM173094 Rice OsSRT1 RNAi transgenic line LM3 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
5.5 96.8 GSM173089 Rice MH63 Control3 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
5.4 96.8 GSM207566 Mudanjiang8 wild type control rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.3 96.7 GSM154948 Leaf_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
5.3 96.7 GSM207567 Mudanjiang8 wild type control rep3 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.3 96.7 GSM173086 Rice MH63 Control1 GSE7197 Down-regulation of OsSRT1 induces DNA fragmentation and cell death in rice
5.1 96.6 GSM207558 Mudanjiang8 OsWRKY13 Overexpressing D11UM1-1 rep1 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
5.0 96.6 GSM207563 Mudanjiang8 OsWRKY13 Overexpressing D11UM7-2 rep2 GSE8380 Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 6e-60 232 Os10g0405300 AK066928.1 - Conserved hypothetical protein 7e+0 At5g14105 unknown protein C.G. S.X.
0.04 8e-4 46 Os10g0414200 9638.m02352 - - 8e-1 At2g28570 unknown protein C.G. S.X.
0.02 1e-2 42 Os08g0242400 AK107305.1 - Homeobox domain containing protein 3e-3 At5g17810 WOX12 (WUSCHEL related homeobox 12) C.G. S.X.
0.01 1e-2 42 Os01g0653700 AK073990.1 - Cyclin-like F-box domain containing protein 8e-2 At1g30475 - C.G. S.X.
0.01 1e-2 42 Os05g0391600 AK110377.1 - Protein of unknown function DUF563 family protein 1e+0 At5g23027 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e-1 36 Arabidopsis thaliana At5g64850 836608 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P - - - C.G. S.X.
0.03 2e+0 34 Glycine max Gma.6874.2.S1_at AW099709 - - 8e-11 At4g14430 IBR10 (INDOLE-3-BUTYRIC ACID RESPONSE 10) C.G. S.X.
0.30 3e-68 258 Hordeum vulgare Contig5092_s_at Contig5092 - - 1e+0 At1g22410 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative C.G. S.X.
0.07 9e-3 42 Populus trichocarpa PtpAffx.50349.2.S1_s_at CV231388 hypothetical protein - 1e-4 At5g09960 unknown protein C.G. S.X.
0.23 1e-59 230 Triticum aestivum Ta.28142.1.A1_at BQ484076 - - 4e-1 At5g47700 60S acidic ribosomal protein P1 (RPP1C) C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1607412_at CF201430.1 - - 4e+0 At4g00950 MEE47 (maternal effect embryo arrest 47) C.G. S.X.
0.28 2e-32 139 Zea mays Zm.2318.1.A1_at BM074442 - - 9e-1 At1g23710 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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