Gene omics information

Query gene ID Os03g0162300
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.9Os03g0162300AK110675.1-Hypothetical protein4e-1At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)S.X.H.G.
0.7793.1Os04g02325009632.m01461--1e+0At1g13440GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)S.X.H.G.
0.7391.1Os12g05117009640.m03180--1e-1At3g03030F-box family proteinS.X.H.G.
0.6181.2Os08g03031009636.m02060--5e-2At5g66230unknown proteinS.X.H.G.
0.6079.7Os01g0288100NM_183572.1--1e-1At1g07175unknown proteinS.X.H.G.
0.3846.9Os11g06877009639.m04295--3e+0At4g14540NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
105.0100.0GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in Musa
81.599.9GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in Musa
62.899.9GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in Musa
14.098.5GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.098.4GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.098.4GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.698.4GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.698.4GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.998.3GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.698.2GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.215e-27123Os01g08998009629.m06698-ANT (Ovule development protein aintegumenta)6e-30At1g51190PLT2 (PLETHORA 2)C.G.S.X.
0.094e-654Os09g0470400NM_192264.1--8e-1At3g09480histone H2B, putativeC.G.S.X.
0.072e-861Os11g03089009639.m01910--1e+1At5g6067060S ribosomal protein L12 (RPL12C)C.G.S.X.
0.042e-861Os07g0162700AK110810.1-Esterase/lipase/thioesterase domain containingprotein3e+0At1g68620hydrolaseC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.034e-136Arabidopsis thalianaAt2g21660816705CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript. Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions, but, promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway. There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).---C.G.S.X.
0.022e-138Glycine maxPsAffx.C70000004_atPsAffx.C70000004--1e-1At1g70895CLE17 (CLAVATA3/ESR-RELATED 17)C.G.S.X.
0.032e-136Hordeum vulgareHB31P17r_atHB31P17r--3e+0At3g53990universal stress protein (USP) family proteinC.G.S.X.
0.034e-240Populus trichocarpaPtpAffx.7885.3.S1_atBU836787hypothetical protein-5e-5At5g26360chaperonin, putativeC.G.S.X.
0.035e-136Triticum aestivumTa.8444.1.A1_atBQ161906--3e+0At3g60010ASK13 (ARABIDOPSIS SKP1-LIKE 13)C.G.S.X.
0.025e-134Vitis vinifera1621212_atBQ794170hypothetical protein LOC100260205-7e-5At4g12790ATP-binding family proteinC.G.S.X.
0.032e-136Zea maysZm.5797.2.A1_a_atBE050459ultraviolet-B-repressible protein-9e-5At2g06520PSBX (photosystem II subunit X)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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