CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0158700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 94.6 Os03g0158700 AK071242.1 - - 9e+0 At4g24060 Dof-type zinc finger domain-containing protein S.X. H.G.
0.42 53.9 Os07g0567000 NM_186358.1 - Exostosin-like family protein 4e-2 At2g35100 ARAD1 (ARABINAN DEFICIENT 1) S.X. H.G.
0.39 48.3 Os10g0394400 AK062938.1 - Leucine-rich repeat, typical subtype containingprotein 6e-1 At5g56200 zinc finger (C2H2 type) family protein S.X. H.G.
0.38 46.9 Os03g0610700 AK121227.1 - Serpin 2e+0 At1g58007 unknown protein S.X. H.G.
0.38 46.9 Os02g0174100 AK062651.1 - SBP domain containing protein 6e-3 At5g50570 squamosa promoter-binding protein, putative S.X. H.G.
0.36 44.0 Os02g0235000 9630.m01296 - ARP2/3 complex, 21 kDa p21-Arc subunit familyprotein 2e+0 At1g60430 ARPC3 (actin-related protein C3) S.X. H.G.
0.32 36.3 Os11g0522000 9639.m02907 - XY4 protein (Fragment) 2e-1 At1g12850 phosphoglycerate/bisphosphoglycerate mutase family protein S.X. H.G.
0.31 34.5 Os02g0202800 AK102082.1 - FAR1 domain containing protein 8e-2 At4g35040 bZIP transcription factor family protein S.X. H.G.
0.31 34.5 Os01g0840900 AK063699.1 - Hypothetical protein 2e-1 At1g71090 auxin efflux carrier family protein S.X. H.G.
0.30 32.7 Os01g0810600 AK109802.1 - Protein kinase domain containing protein 1e-2 At1g51880 leucine-rich repeat protein kinase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.3 99.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.3 99.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.6 99.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.5 99.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.5 99.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.2 99.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.5 99.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.8 99.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.4 98.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.3 98.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 0 868 Os03g0158800 AK108516.1 - Hypothetical protein 2e+0 At3g59520 ATRBL13 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 13) C.G. S.X.
0.08 1e-10 69 Os09g0441000 9637.m02354 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 5e+0 At5g67360 ARA12 C.G. S.X.
0.06 5e-9 63 Os02g0779200 AK106527.1 - Subtilisin-like protease (Fragment) 4e-7 At3g14067 subtilase family protein C.G. S.X.
0.06 3e-8 61 Os07g0578300 AK107610.1 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 1e+0 At3g14067 subtilase family protein C.G. S.X.
0.05 8e-8 59 Os01g0727800 AK108195.1 - Protease-associated PA domain containing protein 8e-2 At5g45650 subtilase family protein C.G. S.X.
0.05 3e-7 57 Os08g0452100 9636.m03523 - Subtilisin-like protease (Fragment) 3e-10 At3g14240 subtilase family protein C.G. S.X.
0.03 1e-10 69 Os04g0558900 AK100861.1 - Proteinase inhibitor I9, subtilisin propeptidedomain containing protein 6e-3 At5g59810 SBT5.4 C.G. S.X.
0.01 1e-6 56 Os04g0573200 AK120348.1 - Copper/Zinc superoxide dismutase family protein 4e-2 At1g12520 ATCCS (COPPER CHAPERONE FOR SOD1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e+0 32 Arabidopsis thaliana At4g24060 828506 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;OPMFB - - - C.G. S.X.
0.04 3e-3 44 Glycine max Gma.13089.1.S1_at AW186256 - - 3e-14 At5g67360 ARA12 C.G. S.X.
0.11 3e-10 65 Hordeum vulgare Contig14392_at Contig14392 - - 5e-1 At2g20630 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.03 8e-1 36 Populus trichocarpa PtpAffx.217959.1.S1_at pmrna33443 hypothetical protein - 2e+0 At1g30515 unknown protein C.G. S.X.
0.24 2e-50 200 Triticum aestivum TaAffx.30588.1.S1_at CA623801 - - 2e+1 At3g50770 calmodulin-related protein, putative C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1611150_at CB980271 - - 4e-5 At4g37280 MRG family protein C.G. S.X.
0.10 1e-6 54 Zea mays Zm.14344.1.A1_at CO529314 subtilisin-like protease - 2e-7 At3g14067 subtilase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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