CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0152300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os03g0152300 AK070875.1 - - 2e-1 At3g49960 peroxidase, putative S.X. H.G.
0.67 87.2 Os05g0312500 AK069307.1 - Reticulon family protein 7e-4 At4g23630 BTI1 (VIRB2-INTERACTING PROTEIN 1) S.X. H.G.
0.67 87.2 Os01g0816700 AK100654.1 - L-ascorbate oxidase homolog precursor (EC1.10.3.3) (Ascorbase) 2e-8 At3g13390 sks11 (SKU5 Similar 11) S.X. H.G.
0.61 81.2 Os10g0323600 AF310253.1 - Profilin A 3e-8 At4g29350 PFN2 (PROFILIN 2) S.X. H.G.
0.61 81.2 Os04g0189400 AK072380.1 - Gamma Purothionin family protein 4e-1 At2g02100 LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69) S.X. H.G.
0.38 46.9 Os05g0283200 AK120717.1 - Plant invertase/pectin methylesterase inhibitordomain containing protein 5e-1 At4g31740 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
363.1 100.0 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
14.6 98.6 GSM159204 Inflorescence (P6, 22 - 30 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
10.0 98.0 GSM159206 Inflorescence (P6, 22 - 30 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
9.4 97.9 GSM159205 Inflorescence (P6, 22 - 30 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
2.8 94.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
2.7 94.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
2.5 93.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
2.4 93.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
2.2 92.7 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
2.2 92.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-15 85 Os01g0270300 AK101508.1 - Cationic peroxidase isozyme 40K precursor 2e-1 At2g38390 peroxidase, putative C.G. S.X.
0.05 2e-31 139 Os01g0223300 AK107015.1 - Conserved hypothetical protein 3e-1 At1g26250 proline-rich extensin, putative C.G. S.X.
0.04 2e-3 46 Os05g0134800 9633.m00371 - Haem peroxidase, plant/fungal/bacterial familyprotein 1e-2 At3g01190 peroxidase 27 (PER27) (P27) (PRXR7) C.G. S.X.
0.03 1e-7 59 Os01g0378100 NM_193889.1 - Peroxidase precursor (EC 1.11.1.7) 1e-2 At5g15180 peroxidase, putative C.G. S.X.
0.03 3e-5 52 Os02g0741200 AK071385.1 - Plant peroxidase family protein 1e-12 At5g47000 peroxidase, putative C.G. S.X.
0.01 5e-4 48 Os07g0531700 AK071504.1 - Conserved hypothetical protein 5e-3 At3g51880 HMGB1 (HIGH MOBILITY GROUP B 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Arabidopsis thaliana At3g49960 824158 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO - - - C.G. S.X.
0.02 3e-1 38 Glycine max PsAffx.C7000153_at PsAffx.C7000153 - - 4e-3 At2g35960 NHL12 C.G. S.X.
0.03 5e-4 46 Hordeum vulgare Contig1876_s_at Contig1876 - - 1e-1 At3g49120 PRXCB (PEROXIDASE CB) C.G. S.X.
0.02 5e+0 34 Populus trichocarpa PtpAffx.200211.1.S1_s_at pmrna397 hypothetical protein - 3e+0 At5g50470 NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7) C.G. S.X.
0.16 6e-33 143 Triticum aestivum Ta.3837.1.A1_at BJ253136 - - 5e-2 At3g28200 peroxidase, putative C.G. S.X.
0.01 4e+0 32 Vitis vinifera 1612585_at CD719642 - - 3e-1 At3g43880 unknown protein C.G. S.X.
0.10 2e-15 83 Zea mays Zm.1382.1.S1_at BQ528972 hypothetical protein LOC100194328 - 1e-1 At4g33130 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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