CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0150200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.97 99.9 Os03g0150200 AY339376.1 - Ethylene-responsive element binding protein 8e-2 At1g06160 ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) S.X. H.G.
0.41 52.4 Os01g0168900 NM_184540.1 - - 3e-5 At3g13540 ATMYB5 (MYB DOMAIN PROTEIN 5) S.X. H.G.
0.34 40.0 Os07g0106850 NM_194245.1 - - 4e-1 At5g28360 ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE) S.X. H.G.
0.34 40.0 Os01g0245565 NM_188753.1 - - 1e+1 At5g13080 WRKY75 S.X. H.G.
0.34 40.0 Os06g0491500 9634.m02839 - - 7e-1 At5g14380 AGP6 (Arabinogalactan proteins 6) S.X. H.G.
0.31 34.5 Os06g0110300 XM_353939.1 - - 5e-1 At5g67490 unknown protein S.X. H.G.
0.31 34.5 Os04g0211600 9632.m01218 - - 6e-1 At1g48145 unknown protein S.X. H.G.
0.30 32.7 Os08g0160600 AK106763.1 - Conserved hypothetical protein 7e-2 At5g11600 unknown protein S.X. H.G.
0.29 31.1 Os03g0683600 9631.m04664 - - 2e-1 At1g75550 glycine-rich protein S.X. H.G.
0.29 31.1 Os03g0790400 9631.m05657 - - 3e+0 At2g36210 auxin-responsive family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
37.3 99.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
37.2 99.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
35.3 99.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
32.8 99.8 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
30.9 99.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
27.6 99.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.1 99.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.9 99.4 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.6 99.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.6 99.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 1e-60 234 Os04g0257500 AK107745.1 - Ethylene-responsive element binding protein 7e-3 At1g06160 ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) C.G. S.X.
0.18 2e-34 147 Os04g0547500 9632.m04453 - - 5e-4 At5g47220 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) C.G. S.X.
0.15 6e-32 139 Os02g0655200 AY339378.1 - Ethylene responsive element binding factor3(OsERF3) 2e-1 At4g27950 CRF4 (CYTOKININ RESPONSE FACTOR 4) C.G. S.X.
0.14 6e-32 139 Os04g0547600 AY339379.1 - Pathogenesis-related transcriptional factor andERF domain containing protein 3e-3 At4g27950 CRF4 (CYTOKININ RESPONSE FACTOR 4) C.G. S.X.
0.13 5e-23 109 Os10g0562900 AY341826.1 - Pathogenesis-related transcriptional factor andERF domain containing protein 6e-1 At4g17490 ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6) C.G. S.X.
0.13 5e-17 89 Os09g0457900 AK067195.1 - AP2 domain containing protein RAP2.6 (Fragment) 5e-1 At3g23230 ethylene-responsive factor, putative C.G. S.X.
0.12 5e-20 99 Os06g0160500 NM_185617.1 - - 1e-1 At1g06160 ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) C.G. S.X.
0.09 8e-22 105 Os01g0224100 AK106517.1 - Ethylene-responsive element binding factor 4e-3 At4g17490 ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 8e-2 38 Arabidopsis thaliana At1g06160 837125 ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. - - - C.G. S.X.
0.22 2e-12 73 Glycine max GmaAffx.15015.1.S1_at BI787734 - - 1e-9 At2g31230 ATERF15 (Ethylene-responsive element binding factor 15) C.G. S.X.
0.15 7e-13 73 Hordeum vulgare Contig2481_s_at Contig2481 - - 8e-6 At1g43160 RAP2.6 (related to AP2 6) C.G. S.X.
0.04 2e-3 44 Populus trichocarpa PtpAffx.152047.1.S1_s_at BU862560 AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor - 2e-12 At5g47220 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) C.G. S.X.
0.26 2e-39 163 Triticum aestivum TaAffx.81079.1.S1_at CA689720 - - 6e-2 At1g06160 ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) C.G. S.X.
0.10 1e-1 36 Vitis vinifera 1611910_s_at AY395745.1 similar to putative ethylene response factor ERF3b - 9e-14 At3g15210 ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4) C.G. S.X.
0.16 7e-22 103 Zea mays Zm.17956.1.A1_at CF637428 - - 2e+0 At3g20570 plastocyanin-like domain-containing protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage