CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0147400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.82 95.0 Os03g0147400 AK062160.1 - Arsenical pump membrane protein family protein 1e-6 At1g02260 transmembrane protein, putative S.X. H.G.
0.48 63.7 Os12g0570000 AK105835.1 - The start codon is not identified. 2e-11 At3g46510 PUB13 (PLANT U-BOX 13) S.X. H.G.
0.48 63.7 Os03g0826600 AK101187.1 - Phosphoesterase family protein 8e-11 At1g07230 hydrolase, acting on ester bonds S.X. H.G.
0.46 60.9 Os01g0505400 AK065111.1 - Pyruvate decarboxylase family protein 2e-10 At5g17380 pyruvate decarboxylase family protein S.X. H.G.
0.43 55.4 Os07g0206800 CA761328 - Conserved hypothetical protein 3e+0 At3g62840 - S.X. H.G.
0.43 55.4 Os03g0324300 AK103227.1 - EIL3 9e-2 At5g21120 EIL2 (ETHYLENE-INSENSITIVE3-LIKE 2) S.X. H.G.
0.42 53.9 Os02g0469600 AK119670.1 - Cysteine proteinase 1 precursor (EC 3.4.22.-) 7e-11 At4g16190 cysteine proteinase, putative S.X. H.G.
0.40 51.1 Os06g0644200 D45383.1 - Vacuolar H+-pyrophosphatase (EC 3.6.1.1) 9e-175 At1g15690 AVP1 S.X. H.G.
0.39 48.3 Os05g0119300 AK068289.1 - Molluscan rhodopsin C-terminal tail family protein 5e-3 At5g45350 proline-rich family protein S.X. H.G.
0.38 46.9 Os03g0191000 AK066651.1 - Anther ethylene-upregulated protein ER1 (Fragment) 1e-16 At5g09410 EICBP.B (ETHYLENE INDUCED CALMODULIN BINDING PROTEIN) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.0 96.6 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
4.4 96.2 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
4.3 96.1 GSM255763 antiOsLIC collar chip GSE12097 antiOsLIC collar chip
4.2 96.0 GSM159208 Seed (S1, 0 - 2 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
3.8 95.7 GSM159207 Seed (S1, 0 - 2 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
3.3 95.1 GSM357134 14-day-old seedling, rep 3 GSE14275 Expression data for heat shock in rice seedlings
3.2 94.9 GSM159264 Drought stress, biological rep 3 GSE6901 Expression data for stress treatment in rice seedlings
3.1 94.8 GSM375777 slr1 (k1001)_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
3.0 94.6 GSM174889 H FR13 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
3.0 94.6 GSM304677 Unstable mutant line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 8e-124 446 Os10g0447900 AK072242.1 - Conserved hypothetical protein 6e-12 At1g02260 transmembrane protein, putative C.G. S.X.
0.17 9e-68 260 Os02g0822100 AK065330.1 - Arsenical pump membrane protein family protein 1e-3 At1g02260 transmembrane protein, putative C.G. S.X.
0.12 1e-36 157 Os10g0547500 AK070040.1 - Conserved hypothetical protein 7e-5 At1g02260 transmembrane protein, putative C.G. S.X.
0.01 4e-2 42 Os04g0677400 AK069752.1 - Conserved hypothetical protein 8e-2 At3g59680 unknown protein C.G. S.X.
0.01 7e-1 38 Os01g0698900 9629.m04872 - Nascent polypeptide associated complex alpha chain 8e-4 At3g12390 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative C.G. S.X.
0.01 7e-1 38 Os01g0962800 9629.m07247 - - 7e-1 At5g16200 50S ribosomal protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-6 56 Arabidopsis thaliana At1g02260 839344 transmembrane protein, putative F:citrate transmembrane transporter activity, transporter activity;P:citrate transport;C:endomembrane system, integral to membrane;BOMAPFV - - - C.G. S.X.
0.01 2e+0 36 Glycine max PsAffx.psHB016xL22f_at PsAffx.psHB016xL22f - - 1e+1 At5g57780 - C.G. S.X.
0.28 2e-44 180 Hordeum vulgare Contig10791_s_at Contig10791 - - 2e-6 At1g02260 transmembrane protein, putative C.G. S.X.
0.06 2e-3 46 Populus trichocarpa PtpAffx.221567.1.S1_at pmrna38512 hypothetical protein - 4e-8 At1g02260 transmembrane protein, putative C.G. S.X.
0.30 1e-40 169 Triticum aestivum Ta.4763.1.S1_a_at CA731559 - - 8e-4 At1g02260 transmembrane protein, putative C.G. S.X.
0.03 4e-4 46 Vitis vinifera 1622592_at CF212806 hypothetical protein LOC100259320 - 1e-6 At1g02260 transmembrane protein, putative C.G. S.X.
0.56 0 668 Zea mays Zm.5820.1.A1_at BG319905 citrate transporter family protein - 7e-11 At1g02260 transmembrane protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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