CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0128800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os03g0128800 AK066570.1 - Conserved hypothetical protein 7e-1 At1g23530 unknown protein S.X. H.G.
0.60 79.7 Os03g0704100 AK070474.1 - PAP fibrillin family protein 2e+0 At1g35410 - S.X. H.G.
0.50 68.0 Os07g0656700 AU173917 - Protein of unknown function DUF1334 family protein 4e-11 At5g13720 - S.X. H.G.
0.46 60.9 Os01g0585300 AK099180.1 - Protein of unknown function DUF1118 family protein 5e-3 At1g74730 unknown protein S.X. H.G.
0.36 44.0 Os04g0657300 CB624212 - Farnesyl pyrophosphate synthetase 2 (FPPsynthetase 2) (FPS 2) (Farnesyl diphosphate synthetase 2)[Includes: Dimethylallyltranstransferase (EC 2.5.1.1) 2e-1 At1g68552 CPuORF53 (Conserved peptide upstream open reading frame 53) S.X. H.G.
0.28 31.1 Os01g0912700 AK068528.1 - Conserved hypothetical protein 1e-1 At2g01340 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.3 98.4 GSM174888 C mock 3 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
10.4 98.1 GSM174883 A mock 3 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
9.4 97.9 GSM174890 G mock 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
8.7 97.8 GSM421706 XOO, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.7 97.8 GSM421683 XOC, 96 hai - rep1 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.6 97.8 GSM421702 XOO, 24 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
8.4 97.7 GSM421726 MOCK, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
7.9 97.6 GSM174885 B FR13 3 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
7.8 97.6 GSM421686 XOC, 96 hai - rep4 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
7.2 97.4 GSM421721 MOCK, 24 hai - rep3 GSE16793 Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-2 40 Os12g0262800 9640.m01578 - - 4e-1 At4g16807 unknown protein C.G. S.X.
0.02 3e-1 38 Os05g0517900 CA761897 - Appr>p cyclic nucleotide phosphodiesterase domaincontaining protein 1e-1 At2g20515 unknown protein C.G. S.X.
0.01 8e-2 40 Os04g0547600 AY339379.1 - Pathogenesis-related transcriptional factor andERF domain containing protein 3e-3 At4g27950 CRF4 (CYTOKININ RESPONSE FACTOR 4) C.G. S.X.
0.01 8e-2 40 Os09g0246500 AK109459.1 - Conserved hypothetical protein 4e+0 At3g28530 UDP-glucose 4-epimerase C.G. S.X.
0.01 8e-2 40 Os12g0141800 AK100388.1 - Hypothetical protein 3e-1 At2g18196 metal ion binding C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-1 36 Arabidopsis thaliana At1g23530 838962 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO - - - C.G. S.X.
0.02 2e-1 38 Glycine max PsAffx.CL1655Contig1_at PsAffx.CL1655Contig1 - - 4e+0 At5g16023 RTFL18 (ROTUNDIFOLIA LIKE 18) C.G. S.X.
0.17 2e-21 103 Hordeum vulgare HVSMEl0002L06r2_at HVSMEl0002L06r2 - - 3e-1 At4g19270 unknown protein C.G. S.X.
0.02 9e-1 36 Populus trichocarpa PtpAffx.73160.1.S1_at BU812883 - - 7e-2 At5g28060 40S ribosomal protein S24 (RPS24B) C.G. S.X.
0.40 5e-85 315 Triticum aestivum TaAffx.71649.1.A1_at BG906531 - - 7e+0 At5g22608 unknown protein C.G. S.X.
0.02 8e-4 44 Vitis vinifera 1613266_at CA815997 hypothetical protein LOC100250168 - 2e+0 At3g16690 nodulin MtN3 family protein C.G. S.X.
0.02 1e+0 34 Zea mays ZmAffx.1037.1.A1_at AI881746 - - 8e-1 At1g46768 RAP2.1 (related to AP2 1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage