CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0120900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os03g0120900 AK106367.1 - AP2 domain containing protein RAP2.8 (Fragment) 4e-18 At4g01500 NGA4 (NGATHA4) S.X. H.G.
0.86 96.4 Os01g0909400 AK068178.1 - Plant protein of unknown function DUF868 familyprotein 1e-5 At1g06160 ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) S.X. H.G.
0.75 91.9 Os03g0108500 AK108704.1 - Sterol desaturase family protein 2e-4 At4g22756 SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) S.X. H.G.
0.69 87.9 Os05g0516100 AK107721.1 - Conserved hypothetical protein 3e-1 At5g44570 unknown protein S.X. H.G.
0.67 87.2 Os02g0133900 AK107180.1 - Eukaryotic protein of unknown function DUF829family protein 7e-1 At4g24240 WRKY7 S.X. H.G.
0.63 82.7 Os04g0557800 AB021079.1 - Ra 5e+0 At5g41315 GL3 (GLABROUS 3) S.X. H.G.
0.58 77.0 Os11g0285000 AK070534.1 - Beta-amyrin synthase 3e-17 At2g07050 CAS1 (cycloartenol synthase 1) S.X. H.G.
0.58 77.0 Os04g0182300 9632.m00908 - Peptidase S8 and S53, subtilisin, kexin, sedolisindomain containing protein 5e+0 At1g01900 SBTI1.1 S.X. H.G.
0.58 77.0 Os02g0103100 AK071040.1 - Conserved hypothetical protein 3e-1 At5g62500 ATEB1B (END BINDING PROTEIN 1B) S.X. H.G.
0.57 77.0 Os03g0259400 9631.m01481 - Leucoanthocyanidin reductase (EC 1.17.1.3)(Leucocyanidin reductase) 5e-1 At4g24700 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
68.1 99.9 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
56.8 99.9 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
55.0 99.9 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
13.9 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
11.3 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 6e-59 230 Os10g0537100 9638.m03537 - - 3e-11 At2g36080 DNA-binding protein, putative C.G. S.X.
0.19 1e-50 202 Os12g0157000 AK110593.1 - Hypothetical protein 1e-5 At2g36080 DNA-binding protein, putative C.G. S.X.
0.17 9e-135 482 Os02g0683500 AK109908.1 - DNA-binding protein RAV1 3e-16 At4g01500 NGA4 (NGATHA4) C.G. S.X.
0.12 1e-29 133 Os05g0549800 CB672626 - Pathogenesis-related transcriptional factor andERF domain containing protein 9e-3 At2g36080 DNA-binding protein, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 4e-18 93 Arabidopsis thaliana At4g01500 826750 NGA4 (NGATHA4) F:transcription factor activity;P:flower development, leaf development;C:cellular_component unknown;PF - - - C.G. S.X.
0.11 1e-12 75 Glycine max GmaAffx.16227.1.S1_at AW133007 RAV-like DNA-binding protein - 7e-27 At1g25560 TEM1 (TEMPRANILLO 1) C.G. S.X.
0.12 6e-25 115 Hordeum vulgare Contig19699_at Contig19699 - - 3e-8 At1g25560 TEM1 (TEMPRANILLO 1) C.G. S.X.
0.12 1e-3 46 Populus trichocarpa PtpAffx.210115.1.S1_at pmrna19932 - - 5e-17 At2g46870 NGA1 (NGATHA1) C.G. S.X.
0.10 2e-20 101 Triticum aestivum TaAffx.35357.1.S1_at BQ609009 - - 7e-5 At2g36080 DNA-binding protein, putative C.G. S.X.
0.05 1e-15 83 Vitis vinifera 1618998_at CF204007.1 - - 5e-16 At4g01500 NGA4 (NGATHA4) C.G. S.X.
0.10 3e-29 129 Zea mays Zm.12114.1.S1_at BM379167 DNA-binding protein RAV1 - 1e-11 At1g25560 TEM1 (TEMPRANILLO 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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