CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0113800

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.52 69.6 Os03g0113800 AK065925.1 - ARM repeat fold domain containing protein 6e-11 At5g41950 binding S.X. H.G.
0.75 91.9 Os09g0541900 AB031299.1 - Proteasome component region PCI domain containingprotein 1e-24 At1g20200 EMB2719 (EMBRYO DEFECTIVE 2719) S.X. H.G.
0.61 81.2 Os05g0301500 AK067027.1 - Ribophorin I (Fragment) 7e-5 At1g76400 ribophorin I family protein S.X. H.G.
0.55 73.7 Os07g0209000 AK058399.1 - Dolichyl-di-phosphooligosaccharide-proteinglycotransferase (Oligosaccharyltransferase)-like 1e-24 At5g66680 DGL1 S.X. H.G.
0.55 73.7 Os05g0147400 AK062146.1 - T-complex protein 1, zeta subunit (TCP-1-zeta)(CCT-zeta) (CCT-zeta- 1) 6e-67 At5g16070 chaperonin, putative S.X. H.G.
0.40 51.1 Os06g0538000 AK069949.1 - Chaperonin Cpn60/TCP-1 family protein 5e-83 At5g26360 chaperonin, putative S.X. H.G.
0.37 45.0 Os01g0911200 AK101333.1 - Ribophorin II family protein 1e-6 At4g21150 HAP6 (HAPLESS 6) S.X. H.G.
0.33 38.8 Os06g0143900 AK111584.1 - Coatomer protein complex, beta prime 6e-99 At1g52360 coatomer protein complex, subunit beta 2 (beta prime), putative S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.8 97.0 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.7 96.4 GSM429982 Rice wild-type panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
4.6 96.3 GSM67058 IR29 control replicate 1 GSE3053 Rice salt expression
4.5 96.3 GSM429983 Rice mutant phoenix (pho) panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
4.4 96.2 GSM67054 FL478 control replicate 3 GSE3053 Rice salt expression
4.1 96.0 GSM409421 Nipponbare_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
4.1 96.0 GSM275409 Bala root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.0 95.9 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.9 95.8 GSM67062 IR29 salt stressed replicate 3 GSE3053 Rice salt expression
3.9 95.8 GSM99864 TCHW P7_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.42 5e-158 559 Os10g0518300 AK099732.1 - TPR-like domain containing protein 2e-5 At5g41950 binding C.G. S.X.
0.01 7e-3 44 Os10g0442700 AK066106.1 - - 5e-4 At5g03320 protein kinase, putative C.G. S.X.
0.01 7e-3 44 Os11g0538900 AK072950.1 - Citrate synthase (EC 4.1.3.7) 4e-40 At2g44350 ATCS C.G. S.X.
0.01 5e-1 38 Os08g0468400 9636.m03666 - Conserved hypothetical protein 1e+0 At3g55460 SCL30 C.G. S.X.
0.01 5e-1 38 Os10g0494000 AK106067.1 - Protein of unknown function DUF789 family protein 8e-7 At1g03610 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 6e-11 69 Arabidopsis thaliana At5g41950 834200 binding F:binding;P:biological_process unknown;C:cellular_component unknown;OMBFPAV - - - C.G. S.X.
0.09 4e-19 97 Glycine max Gma.7636.1.S1_at AW351204 - - 1e-20 At5g41950 binding C.G. S.X.
0.50 0 878 Hordeum vulgare Contig6886_at Contig6886 - - 9e-7 At5g41950 binding C.G. S.X.
0.20 3e-20 101 Populus trichocarpa PtpAffx.7088.1.S1_a_at CF233424 hypothetical protein - 1e-49 At5g41950 binding C.G. S.X.
0.21 3e-56 220 Triticum aestivum Ta.8150.3.S1_a_at CA641945 - - 1e-3 At5g41950 binding C.G. S.X.
0.25 1e-18 93 Vitis vinifera 1613126_at CF214395 hypothetical protein LOC100232876 - 5e-35 At5g41950 binding C.G. S.X.
0.16 3e-60 232 Zea mays Zm.8126.1.A1_at CK348022 - - 2e-3 At5g41950 binding C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage