CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os03g0111200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 68.0 Os03g0111200 AK060379.1 - Remorin 5e-1 At1g60989 SCRL7 (SCR-Like 7) S.X. H.G.
0.83 95.8 Os01g0971400 AK105881.1 - Cysteine proteinase 1e-2 At1g20850 XCP2 (xylem cysteine peptidase 2) S.X. H.G.
0.67 87.2 Os07g0104100 AK107894.1 - Peroxidase 27 precursor (EC 1.11.1.7) (AtperoxP27) (PRXR7) (ATP12a) 5e-2 At1g44970 peroxidase, putative S.X. H.G.
0.55 73.7 Os03g0793800 AK061537.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 8e+0 At5g23100 unknown protein S.X. H.G.
0.31 34.5 Os05g0108600 AK106508.1 - Cysteine proteinase 1e-11 At1g20850 XCP2 (xylem cysteine peptidase 2) S.X. H.G.
0.25 24.1 Os04g0613700 AK105086.1 - The start codon is not identified. 1e-3 At2g35020 UTP--glucose-1-phosphate uridylyltransferase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.6 97.5 GSM359921 Pokkali root, control, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
6.1 97.1 GSM359924 Pokkali root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
6.0 97.0 GSM359919 Pokkali root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
5.8 97.0 GSM359914 IR63731 root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
5.7 96.9 GSM359920 Pokkali root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
5.6 96.9 GSM359922 Pokkali root, salt-treated, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
5.5 96.8 GSM159203 Inflorescence (P5, 15 - 22 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
5.3 96.7 GSM159179 Root, 7-day-old Seedling, biological rep 3 GSE6893 Expression data for reproductive development in rice
5.2 96.7 GSM159201 Inflorescence (P5, 15 - 22 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
5.2 96.7 GSM359906 FL478 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 4e-3 44 Os04g0533300 AK061351.1 - Remorin (pp34) 5e-4 At5g23750 remorin family protein C.G. S.X.
0.08 3e-4 48 Os02g0824500 AK111296.1 - - 2e-3 At3g48940 remorin family protein C.G. S.X.
0.05 4e-3 44 Os08g0267300 AK105097.1 - Peptidase A1, pepsin family protein 9e-8 At5g23750 remorin family protein C.G. S.X.
0.03 4e-3 44 Os12g0548700 AK058739.1 - CI2C 1e+0 At4g14805 protease inhibitor/seed storage/lipid transfer protein (LTP)-related C.G. S.X.
0.03 7e-2 40 Os06g0654400 9634.m04301 - - 2e-9 At4g31730 GDU1 (GLUTAMINE DUMPER 1) C.G. S.X.
0.02 2e-2 42 Os01g0772200 AK060471.1 - The start codon is not identified. 7e-4 At1g75510 transcription initiation factor IIF beta subunit (TFIIF-beta) family protein C.G. S.X.
0.02 7e-2 40 Os02g0724700 9630.m04821 - - 4e-1 At1g06980 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 36 Arabidopsis thaliana At1g60989 3767593 SCRL7 (SCR-Like 7) Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein). - - - C.G. S.X.
0.02 2e-1 38 Glycine max Gma.4199.1.S1_at BQ474127 - - 7e-2 At2g47700 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.44 4e-74 278 Hordeum vulgare Contig14482_at Contig14482 - - 1e-4 At3g48940 remorin family protein C.G. S.X.
0.02 2e-1 38 Populus trichocarpa PtpAffx.71659.1.S1_at CF232889 hypothetical protein - 9e-8 At3g52790 peptidoglycan-binding LysM domain-containing protein C.G. S.X.
0.38 5e-63 242 Triticum aestivum Ta.28480.1.S1_at CD452788 - - 9e-3 At3g48940 remorin family protein C.G. S.X.
0.03 4e-2 38 Vitis vinifera 1613097_at BQ795148 hypothetical protein LOC100241460 - 2e-18 At3g61260 DNA-binding family protein / remorin family protein C.G. S.X.
0.32 9e-35 147 Zea mays Zm.4255.1.S1_at AY112172.1 - - 2e+0 At5g23750 remorin family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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