CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0823000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.9 Os02g0823000 AK122065.1 - Protease-associated PA domain containing protein 2e-20 At1g63690 protease-associated (PA) domain-containing protein S.X. H.G.
0.73 91.1 Os08g0122000 AK067159.1 - B' regulatory subunit of PP2A 6e-12 At3g26020 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative S.X. H.G.
0.50 68.0 Os05g0137400 BQ909233 - Phytepsin precursor (EC 3.4.23.40) (Asparticproteinase) 3e-1 At3g20550 DDL (DAWDLE) S.X. H.G.
0.36 44.0 Os01g0556400 CB657305 - Heat shock protein DnaJ family protein 4e-3 At5g05750 DNAJ heat shock N-terminal domain-containing protein S.X. H.G.
0.31 34.5 Os09g0558300 AK102179.1 - Cyclic nucleotide-gated channel A (Fragment) 2e-11 At4g30360 ATCNGC17 S.X. H.G.
0.15 10.3 Os03g0223700 AK068416.1 - ARM repeat fold domain containing protein 2e-49 At2g01690 binding S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.8 96.5 GSM159183 Y Leaf, biological rep 1 GSE6893 Expression data for reproductive development in rice
4.6 96.3 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice
4.2 96.0 GSM357133 14-day-old seedling, rep 2 GSE14275 Expression data for heat shock in rice seedlings
3.3 95.1 GSM149411 Rice Bala 0ppm Arsenate (Control) Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
3.0 94.6 GSM159184 Y Leaf, biological rep 2 GSE6893 Expression data for reproductive development in rice
2.9 94.5 GSM302923 seedling_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
2.8 94.3 GSM304390 Stable transgenic rice line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
2.7 94.1 GSM304395 Control for the stable transgenic rice line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
2.6 93.8 GSM149412 Rice Bala 1ppm Arsenate Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
2.4 93.3 GSM255763 antiOsLIC collar chip GSE12097 antiOsLIC collar chip
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.58 0 896 Os06g0730900 AK064963.1 - - 4e-40 At1g63690 protease-associated (PA) domain-containing protein C.G. S.X.
0.01 3e-2 42 Os01g0618800 AK068431.1 - Peptidase M41 domain containing protein 4e-46 At5g53170 FTSH11 (FtsH protease 11) C.G. S.X.
0.01 1e-1 40 Os01g0720700 AK102935.1 - Serine acetyltransferase 3e-58 At3g11510 40S ribosomal protein S14 (RPS14B) C.G. S.X.
0.01 1e-1 40 Os01g0843900 NM_190563.1 - Laccase (EC 1.10.3.2) 8e-2 At5g23440 FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1) C.G. S.X.
0.01 1e-1 40 Os02g0135500 AK119583.1 - Protein of unknown function DUF563 family protein 3e-1 At3g60270 uclacyanin, putative C.G. S.X.
0.01 1e-1 40 Os02g0559300 AK100088.1 - Protein kinase domain containing protein 1e-4 At1g71530 protein kinase family protein C.G. S.X.
0.01 1e-1 40 Os09g0459900 AK063208.1 - Cyclin-dependent kinase inhibitor family protein 7e-2 At4g36780 transcription regulator C.G. S.X.
0.01 1e-1 40 Os10g0494300 AK072452.1 - ABC transporter 3e-69 At1g17840 WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 2e-20 101 Arabidopsis thaliana At1g63690 842673 protease-associated (PA) domain-containing protein F:peptidase activity, aspartic-type endopeptidase activity;P:proteolysis;C:plasma membrane;MPOBF - - - C.G. S.X.
0.17 1e-19 99 Glycine max GmaAffx.77102.1.S1_at BQ273536 - - 2e-34 At1g63690 protease-associated (PA) domain-containing protein C.G. S.X.
0.67 0 1427 Hordeum vulgare Contig8473_at Contig8473 - - 2e-20 At1g63690 protease-associated (PA) domain-containing protein C.G. S.X.
0.32 5e-25 117 Populus trichocarpa PtpAffx.202220.1.S1_at pmrna4443 hypothetical protein - 1e-61 At1g01650 aspartic-type endopeptidase/ peptidase C.G. S.X.
0.24 2e-61 238 Triticum aestivum TaAffx.60138.2.S1_at CA606304 - - 2e-20 At1g63690 protease-associated (PA) domain-containing protein C.G. S.X.
0.12 5e-9 61 Vitis vinifera 1607795_at CF415624 hypothetical protein LOC100241031 - 3e-27 At1g63690 protease-associated (PA) domain-containing protein C.G. S.X.
0.40 2e-65 250 Zea mays Zm.4826.1.A1_at AY107837.1 signal peptide peptidase-like 2B - 7e-13 At1g63690 protease-associated (PA) domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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