Gene omics information

Query gene ID	Os02g0822600
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.9	Os02g0822600	AK060728.1	-	50S ribosomal protein L9, chloroplast precursor(CL13)	2e+0	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.83	95.8	Os03g0219900	AK066527.1	-	50S ribosomal protein L15, chloroplast precursor(CL15) (Fragment)	5e-1	At3g25920	RPL15	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.83	95.8	Os01g0749200	AK104146.1	-	50S ribosomal protein L13	1e-20	At1g78630	emb1473 (embryo defective 1473)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	Os01g0278900	AK120429.1	-	Hypothetical protein	3e-7	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	Os01g0678600	AK120629.1	-	Ribosomal protein S20 family protein	1e-1	At4g30460	glycine-rich protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	Os03g0704000	CR281175	-	30S ribosomal protein S13, chloroplast precursor(CS13)	1e-1	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.6	97.3	GSM431939	Shoot- -Fe-P biological rep1	GSE17245	Transcriptome analysis of iron and phosphorus interaction in rice seedlings
6.3	97.2	GSM431940	Shoot- -Fe-P biological rep2	GSE17245	Transcriptome analysis of iron and phosphorus interaction in rice seedlings
5.8	97.0	GSM267999	Green leaves in F9G RILs from parents lines	GSE10872	Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic
5.7	96.9	GSM421718	MOCK, 8 hai - rep4	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
5.3	96.7	GSM421667	XOC, 2 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.5	96.3	GSM431935	Shoot- -Fe+P biological rep1	GSE17245	Transcriptome analysis of iron and phosphorus interaction in rice seedlings
4.5	96.3	GSM431934	Shoot- +Fe+P biological rep2	GSE17245	Transcriptome analysis of iron and phosphorus interaction in rice seedlings
4.3	96.1	GSM421671	XOC, 4 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.3	96.1	GSM421695	XOO, 8 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
4.2	96.0	GSM421675	XOC, 8 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	36	Os03g0231600	CB674575	-	Branched-chain-amino-acid aminotransferase 3,chloroplast precursor (EC 2.6.1.42) (Atbcat-3)	2e-1	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e+0	36	Os07g0252400	AK059649.1	-	Cellulose synthase-8	5e-41	At2g21770	CESA9 (CELLULOSE SYNTHASE A9)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e+0	36	Os12g0192500	AK100920.1	-	The start codon is not identified.	1e-6	At1g22940	TH1 (THIAMINE REQUIRING 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e+0	34	Os01g0877400	AK106754.1	-	Avr9 elicitor response-like protein	9e-1	At1g77810	galactosyltransferase family protein	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e+0	34	Os02g0713400	AK071251.1	-	Thioredoxin reductase 1 (EC 1.8.1.9)(NADPH-dependent thioredoxin reductase 1) (NTR 1)	2e-7	At2g17420	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e+0	34	Os06g0327300	AK106368.1	-	The start codon is not identified.	8e-13	At4g35460	NTRB (NADPH-DEPENDENT THIOREDOXIN REDUCTASE B)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	4e+0	34	Os11g0479100	9639.m02614	-	Disease resistance protein family protein	2e+0	At3g33520	ATARP6	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e+0	34	Arabidopsis thaliana	At3g44890	823623	RPL9 (RIBOSOMAL PROTEIN L9)	Plastid ribosomal protein CL9	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	1e-14	81	Glycine max	Gma.15874.1.S1_at	CD397659	-	-	3e-18	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	C.G.	S.X.	Please select
0.31	4e-68	258	Hordeum vulgare	Contig5492_at	Contig5492	-	-	1e-7	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	C.G.	S.X.	Please select
0.16	8e-10	65	Populus trichocarpa	PtpAffx.53128.1.S1_at	CV238625	-	-	7e-25	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	8e-68	258	Triticum aestivum	Ta.14183.1.S1_at	AY123421.1	hypothetical LOC543077	-	2e-3	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	C.G.	S.X.	Please select
0.13	4e-5	48	Vitis vinifera	1606458_at	BQ792397	hypothetical protein LOC100251697	-	4e-11	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	C.G.	S.X.	Please select
0.12	1e-9	63	Zea mays	Zm.8900.2.A1_at	AI759040	50S ribosomal protein L9	-	3e+0	At3g01328	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name
L	GO:0006412	The cellular metabolic process by which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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