CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0792900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 94.6 Os02g0792900 AK068367.1 - TMS membrane protein/tumour differentiallyexpressed protein family protein 1e-15 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein S.X. H.G.
0.75 91.9 Os09g0394900 AK061821.1 - Annexin-like protein 3e+0 At5g23640 unknown protein S.X. H.G.
0.75 91.9 Os07g0512200 CF292921 - Symbiosis-related like protein 2e-40 At4g21980 APG8A (AUTOPHAGY 8A) S.X. H.G.
0.75 91.9 Os01g0707300 AK104463.1 - Vesicle transport v-SNARE family protein 6e-7 At3g29100 VTI13 S.X. H.G.
0.67 87.2 Os05g0402300 AK070043.1 - Protein of unknown function UPF0005 family protein 9e-3 At4g15470 - S.X. H.G.
0.60 79.7 Os09g0512900 AK104595.1 - Conserved hypothetical protein 7e-19 At5g11680 unknown protein S.X. H.G.
0.60 79.7 Os05g0409300 AK065214.1 - Cysteine protease inhibitor cystatin (Fragment) 2e+0 At2g20260 PSAE-2 (photosystem I subunit E-2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.3 93.0 GSM359907 FL478 root, salt-treated, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
2.2 92.7 GSM278845 WuYun3-RSV infected, biological rep2 GSE11025 Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
2.2 92.7 GSM359902 FL478 root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
2.0 92.0 GSM262005 IAC165, 4 days after infection with S. hermonthica, biological replicate #2 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
2.0 92.0 GSM159210 Seed (S2, 3 - 4 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
2.0 92.0 GSM359904 FL478 root, control, biological replicate 3 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
1.9 91.6 GSM255763 antiOsLIC collar chip GSE12097 antiOsLIC collar chip
1.9 91.6 GSM159211 Seed (S2, 3 - 4 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
1.9 91.6 GSM359903 FL478 root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
1.9 91.6 GSM359911 IR29 root, salt-treated, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-4 50 Os03g0454100 AK067011.1 - TMS membrane protein/tumour differentiallyexpressed protein family protein 1e-11 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
0.02 4e-1 38 Os03g0126900 AK109217.1 - Conserved hypothetical protein 3e-1 At5g14440 - C.G. S.X.
0.01 4e-1 38 Os01g0764900 AK066796.1 - Formamidase-like protein 2e-27 At4g37550 formamidase, putative / formamide amidohydrolase, putative C.G. S.X.
0.01 4e-1 38 Os08g0455700 9636.m03564 - Exo70 exocyst complex subunit family protein 1e-2 At5g50380 ATEXO70F1 (exocyst subunit EXO70 family protein F1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 1e-15 85 Arabidopsis thaliana At1g16180 838187 TMS membrane family protein / tumour differentially expressed (TDE) family protein F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;MFPO - - - C.G. S.X.
0.11 1e-9 65 Glycine max GmaAffx.68085.1.S1_at BU761558 - - 6e-5 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
0.58 0 1011 Hordeum vulgare Contig3707_s_at Contig3707 - - 1e-23 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
0.22 6e-24 113 Populus trichocarpa PtpAffx.1257.1.S1_a_at CF228330 hypothetical protein - 3e-65 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
0.61 0 1243 Triticum aestivum Ta.906.1.S1_at CK195658 - - 3e-22 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
0.28 2e-20 99 Vitis vinifera 1611216_at CB912018 hypothetical protein LOC100262087 - 4e-126 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
0.66 0 1429 Zea mays Zm.747.1.A1_at CF627612 hypothetical protein LOC100191588 - 3e-22 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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