CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0781000

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.37 45.0 Os02g0781000 AK058942.1 - Glycoside hydrolase, family 28 protein 1e-7 At1g19170 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein S.X. H.G.
0.73 91.1 Os05g0459300 AK119604.1 - Conserved hypothetical protein 4e-1 At5g07520 GRP18 (GLYCINE-RICH PROTEIN 18) S.X. H.G.
0.59 78.0 Os10g0504600 AY224548.1 - Chorion 2 family protein 3e-8 At5g52280 protein transport protein-related S.X. H.G.
0.25 24.1 Os01g0323000 AK100396.1 - Ser Thr specific protein kinase-like protein 5e-12 At1g56720 protein kinase family protein S.X. H.G.
0.19 15.1 Os09g0108400 AK106506.1 - Conserved hypothetical protein 3e-1 At1g10500 ATCPISCA (chloroplast-localized IscA-like protein) S.X. H.G.
0.19 15.1 Os06g0207500 AK067995.1 - Protein of unknown function DUF231 domaincontaining protein 3e-11 At5g06700 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.8 98.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.4 97.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 3e-20 101 Os09g0439400 AK121407.1 - Glycoside hydrolase, family 28 protein 2e-11 At3g42950 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.03 4e-7 57 Os05g0587000 9633.m04802 - Glycoside hydrolase, family 28 protein 2e-4 At3g62110 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.03 3e-5 52 Os01g0238300 NM_188690.1 - - 2e-1 At5g45280 pectinacetylesterase, putative C.G. S.X.
0.02 3e-5 52 Os09g0493000 AK107737.1 - Conserved hypothetical protein 2e+0 At3g44950 glycine-rich protein C.G. S.X.
0.02 7e-5 50 Os08g0107300 9636.m00059 - Glycoside hydrolase, family 28 protein 3e+0 At3g06770 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.02 3e-1 38 Os08g0465900 9636.m03650 - DNA polymerase epsilon subunit B family protein 3e-5 At5g22110 ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) C.G. S.X.
0.01 1e+0 36 Os02g0769200 AK106777.1 - Peptidoglycan-binding LysM domain containingprotein 3e-1 At4g28460 unknown protein C.G. S.X.
0.01 1e+0 36 Os08g0317900 9636.m02213 - - 3e-1 At2g16070 PDV2 (PLASTID DIVISION2) C.G. S.X.
0.01 1e+0 36 Os11g0256900 CB657230 - Hypothetical protein 3e+0 At3g52070 unknown protein C.G. S.X.
0.01 1e+0 36 Os12g0554800 AK105676.1 - Polygalacturonase-like protein 6e-11 At5g49215 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-7 57 Arabidopsis thaliana At1g19170 838500 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:mitochondrion;FPBOMA - - - C.G. S.X.
0.04 8e-4 46 Glycine max GmaAffx.78411.1.S1_at BI424461 - - 1e-9 At1g19170 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.02 1e-3 44 Hordeum vulgare Contig12694_at Contig12694 - - 8e-7 At4g33440 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.11 5e-8 59 Populus trichocarpa Ptp.4327.1.S1_s_at DN484263 hypothetical protein - 4e-17 At3g42950 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.61 0 763 Triticum aestivum Ta.9167.1.S1_at CD935966 - - 4e-2 At3g42950 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1620093_at CF404295 - - 1e+1 Atmg00370 - C.G. S.X.
0.25 7e-51 200 Zea mays Zm.19171.1.A1_at CO532329 hypothetical protein LOC100272705 - 7e-2 At3g42950 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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