CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0755400

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 58.1 Os02g0755400 AK106338.1 - RNA recognition motif-containing protein SEB-4 1e-4 At1g22910 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.57 77.0 Os02g0712700 9630.m04699 - Legume lectin, beta domain containing protein 3e-4 At5g06740 lectin protein kinase family protein S.X. H.G.
0.29 31.1 Os04g0652700 AK106059.1 - Nuclease I 6e-1 At2g37000 TCP family transcription factor, putative S.X. H.G.
0.25 24.1 Os07g0176400 C22382 - Conserved hypothetical protein 2e+0 At5g55570 unknown protein S.X. H.G.
0.25 24.1 Os10g0208600 AK068630.1 - Viral coat and capsid protein family protein 5e-1 At1g11700 unknown protein S.X. H.G.
0.13 8.2 Os03g0183000 AK060527.1 - AP2 domain containing protein RAP2.6 (Fragment) 6e-4 At1g43160 RAP2.6 (related to AP2 6) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.8 98.1 GSM431926 Root- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
10.2 98.0 GSM431927 Root- -Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
10.1 98.0 GSM154829 Root_DMSO-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
9.9 98.0 GSM154832 Root_DMSO-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
8.6 97.8 GSM154831 Root_DMSO-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
8.3 97.7 GSM431928 Root- -Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
8.0 97.6 GSM159271 Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
7.2 97.4 GSM359920 Pokkali root, control, biological replicate 2 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
7.1 97.4 GSM359919 Pokkali root, control, biological replicate 1 GSE14403 Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
6.8 97.3 GSM431925 Root- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-8 63 Os03g0286500 AK060649.1 - RNA-binding region containing protein 1 (HSRNASEB)(ssDNA binding protein SEB4) (CLL-associated antigenKW-5). Splice isoform 2 8e-10 At3g54770 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.05 2e-8 63 Os06g0622900 AK065654.1 - RNA-binding region containing protein 1 (HSRNASEB)(ssDNA binding protein SEB4) (CLL-associated antigenKW-5). Splice isoform 2 4e-3 At1g78260 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.03 6e-14 81 Os02g0714000 AK067428.1 - RGP-3 (Fragment) 3e-1 At1g22910 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.03 2e-8 63 Os01g0958500 AK072960.1 - RNA binding protein-like 1e-6 At1g78260 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.02 2e-4 50 Os03g0245900 9631.m01359 - - 2e-4 At1g22910 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.01 4e-3 46 Os03g0844500 AK070337.1 - Serine/threonine protein phosphatase 2A, 56 kDaregulatory subunit, delta isoform (PP2A, B subunit, B'delta isoform) (PP2A, B subunit, B56 delta isoform)(PP2A, B subunit, PR61 delta isoform) (PP2A, B subunit,R5 delta isoform). Splice isoform Delta-3 5e-7 At3g26020 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative C.G. S.X.
0.01 4e-3 46 Os03g0844600 AK108050.1 - Lipolytic enzyme, G-D-S-L family protein 5e-7 At3g26020 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative C.G. S.X.
0.01 6e-2 42 Os12g0599000 9640.m03982 - - 3e-2 At3g14260 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e-4 50 Arabidopsis thaliana At1g22910 838898 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA - - - C.G. S.X.
0.01 4e-5 52 Glycine max Gma.6832.1.S1_at BU550964 - - 1e-11 At1g20880 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.17 7e-63 242 Hordeum vulgare Contig21062_at Contig21062 - - 2e-6 At1g22910 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.01 6e-1 38 Populus trichocarpa PtpAffx.21681.1.S1_at CV232306 single myb histone - 3e-3 At1g17520 DNA-binding protein, putative C.G. S.X.
0.09 2e-49 198 Triticum aestivum Ta.19407.1.S1_at CA644762 - - 1e-9 At1g22910 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1617361_at CF404356 hypothetical protein LOC100244017 - 3e-50 At4g35630 PSAT C.G. S.X.
0.04 1e-5 52 Zea mays Zm.4360.1.A1_at AI712029 hypothetical protein LOC100279918 - 4e-1 At1g13755 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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