CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0731200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 73.7 Os02g0731200 AY177702.1 - Transcription factor MADS57 3e-12 At3g57230 AGL16 (AGAMOUS-LIKE 16) S.X. H.G.
0.33 38.8 Os06g0296700 AK065533.1 - Hypothetical protein 1e+0 At4g13150 unknown protein S.X. H.G.
0.31 34.5 Os10g0439200 9638.m02604 - Alpha-expansin OsEXPA25 1e-4 At2g37640 EXP3 S.X. H.G.
0.23 21.2 Os01g0937600 AK064091.1 - Peptidase aspartic family protein 1e+1 At5g44500 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative S.X. H.G.
0.22 19.4 Os02g0813100 9630.m05643 - Cyclin-like F-box domain containing protein 4e+0 At5g38300 unknown protein S.X. H.G.
0.03 1.4 Os03g0163200 AK108613.1 - Plant protein of unknown function family protein 2e-2 At3g43630 nodulin, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
29.3 99.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.8 99.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.2 99.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.0 99.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.0 99.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.0 99.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.7 98.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 8e-42 173 Os08g0431900 AY345220.1 - Transcription factor MADS23 6e-6 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.20 1e-34 149 Os02g0579600 AY177696.1 - Transcription factor MADS27 7e-19 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.18 3e-38 161 Os04g0461300 9632.m03661 - MADS-box transcription factor MADS2 3e-7 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.11 6e-18 93 Os01g0201700 AY553724.1 - MADS box protein 2e-10 At4g18960 AG (AGAMOUS) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 3e-12 73 Arabidopsis thaliana At3g57230 824890 AGL16 (AGAMOUS-LIKE 16) MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes. - - - C.G. S.X.
0.05 6e-5 50 Glycine max Gma.11362.1.S1_at AW395011 - - 1e-4 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.09 3e-4 46 Hordeum vulgare Contig3831_at Contig3831 - - 3e-15 At4g18960 AG (AGAMOUS) C.G. S.X.
0.17 1e-3 46 Populus trichocarpa PtpAffx.201225.1.S1_s_at pmrna2438 hypothetical protein - 6e-24 At2g14210 AGL44 (AGAMOUS-LIKE 44) C.G. S.X.
0.12 3e-9 63 Triticum aestivum Ta.7339.3.S1_a_at BJ224514 MADS-box transcription factor TaAGL13 - 1e+0 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1619977_at BQ794993 hypothetical protein LOC100251508 - 3e-27 At2g22540 SVP (SHORT VEGETATIVE PHASE) C.G. S.X.
0.17 1e-58 226 Zea mays Zm.15206.1.A1_at BM268642 - - 6e-18 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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