CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0722300

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.65 83.8 Os02g0722300 AK064958.1 - Nonaspanin (TM9SF) family protein 6e-21 At4g12650 - S.X. H.G.
0.86 96.4 Os03g0227000 AK068454.1 - Coatomer gamma subunit (Gamma-coat protein)(Gamma-COP) 1e-25 At4g34450 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative S.X. H.G.
0.69 87.9 Os06g0618600 AK060212.1 - Conserved hypothetical protein 8e-8 At1g50120 - S.X. H.G.
0.67 87.2 Os07g0657200 AK072927.1 - WD40-like domain containing protein 3e-8 At3g63460 WD-40 repeat family protein S.X. H.G.
0.67 87.2 Os05g0230600 AK070398.1 - WD40-like domain containing protein 1e-7 At5g11560 catalytic S.X. H.G.
0.65 83.8 Os11g0181100 AK100605.1 - Nonaspanin (TM9SF) family protein 2e-70 At1g10950 endomembrane protein 70, putative S.X. H.G.
0.63 82.7 Os05g0556100 AK065908.1 - SDL5A 1e-43 At3g61760 ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B) S.X. H.G.
0.60 79.7 Os02g0537900 AK070310.1 - Vacuolar-type H+-translocating inorganicpyrophosphatase (EC 3.6.1.1) 5e-87 At1g16780 vacuolar-type H+-translocating inorganic pyrophosphatase, putative S.X. H.G.
0.59 78.0 Os02g0690700 AU030655 - Clathrin adaptor complex, medium chain familyprotein 3e+0 At1g19770 ATPUP14 S.X. H.G.
0.56 76.3 Os03g0355600 AK068938.1 - Adapter-related protein complex 1 beta 1 subunit(Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit)(Clathrin assembly protein complex 1 beta large chain).Splice isoform B 0 At4g23460 beta-adaptin, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.0 95.9 GSM429984 Rice wild-type panicle rep2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
3.6 95.5 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.6 95.5 GSM99877 TCHW P19_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
3.4 95.2 GSM275409 Bala root tip_At the wax layer_rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.3 95.1 GSM67057 FL478 salt stressed replicate 3 GSE3053 Rice salt expression
3.3 95.1 GSM302915 emb6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
3.2 94.9 GSM275415 Azucena root tip_Before the wax layer_Rep2 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.2 94.9 GSM429982 Rice wild-type panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
3.1 94.8 GSM99864 TCHW P7_ir29 control, biological rep1 GSE4438 Expression data from rice under salinity stress
3.0 94.6 GSM99865 TCHW P8_ir29 control, biological rep2 GSE4438 Expression data from rice under salinity stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 2e-50 202 Os08g0496900 AK102663.1 - Nonaspanin (TM9SF) family protein 1e-31 At4g12650 - C.G. S.X.
0.22 6e-38 161 Os05g0168500 AK100711.1 - Nonaspanin (TM9SF) family protein 2e-27 At4g12650 - C.G. S.X.
0.01 6e-4 48 Os03g0219700 AK071610.1 - DEAD/DEAH box helicase, N-terminal domaincontaining protein 3e-4 At1g12770 EMB1586 (embryo defective 1586) C.G. S.X.
0.01 6e-4 48 Os03g0694900 AK121157.1 - Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNAligase) (ValRS) 2e-28 At1g14610 TWN2 (TWIN 2) C.G. S.X.
0.01 3e-3 46 Os04g0577000 AK119957.1 - Ubiquitin fusion degradation protein UFD1 familyprotein 3e-15 At2g21270 ubiquitin fusion degradation UFD1 family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 6e-21 103 Arabidopsis thaliana At4g12650 826878 - F:unknown;P:unknown;C:integral to membrane, Golgi apparatus, plasma membrane, vacuole;MPOF - - - C.G. S.X.
0.13 4e-23 111 Glycine max Gma.1266.2.S1_at BM522609 - - 2e-19 At4g12650 - C.G. S.X.
0.61 0 1467 Hordeum vulgare Contig14150_at Contig14150 - - 4e-18 At4g12650 - C.G. S.X.
0.14 1e-19 99 Populus trichocarpa Ptp.5510.1.S1_at CV243206 hypothetical protein - 5e-41 At4g12650 - C.G. S.X.
0.37 0 835 Triticum aestivum Ta.4984.1.A1_at CD900796 - - 4e-11 At4g12650 - C.G. S.X.
0.15 2e-9 63 Vitis vinifera 1621629_at CF513381 hypothetical protein LOC100246599 - 3e-20 At5g35160 - C.G. S.X.
0.27 2e-28 127 Zea mays Zm.6675.1.A1_at BM337828 - - 4e-31 At4g12650 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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