CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0713700

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.43 55.4 Os02g0713700 9630.m04710 - Protein of unknown function DUF296 domaincontaining protein 3e+0 At5g03240 UBQ3 (POLYUBIQUITIN 3) S.X. H.G.
0.53 71.3 Os08g0533300 9636.m04276 - Amino acid-binding ACT domain containing protein 3e-3 At5g65890 ACR1 (ACT Domain Repeat 1) S.X. H.G.
0.53 71.3 Os09g0486700 AK105294.1 - Nonphototropic hypocotyl protein 1 (EC 2.7.1.37)(Phototropin) 6e-5 At3g20830 protein kinase family protein S.X. H.G.
0.50 68.0 Os06g0714600 AU223447 - Ras GTPase family protein 1e-2 At3g46830 ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) S.X. H.G.
0.42 53.9 Os05g0581900 AK109090.1 - Conserved hypothetical protein 6e-4 At4g26830 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds S.X. H.G.
0.37 45.0 Os08g0167000 9636.m00636 - ABC transporter related domain containing protein 2e-8 At1g31770 ABC transporter family protein S.X. H.G.
0.34 40.0 Os06g0691800 AK065392.1 - - 1e-4 At2g47060 serine/threonine protein kinase, putative S.X. H.G.
0.30 32.7 Os09g0423400 AK072133.1 - Biopterin transport-related protein BT1 familyprotein 3e-4 At5g10820 integral membrane transporter family protein S.X. H.G.
0.10 5.7 Os05g0405600 CF321959 - Cytochrome P450 family protein 8e+0 Atcg00560 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
81.1 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.3 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.1 98.4 GSM100439 Rice Azucena 0ppm Arsenate (Control) Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
11.7 98.2 GSM159172 Rice coleoptiles, 4 days old, aerobic, replicate N.1 (sample#9) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
10.3 98.1 GSM100440 Rice Azucena 0ppm Arsenate (Control) Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
9.7 98.0 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
6.7 97.3 GSM375765 gid1-3_ shoot_replicate 1 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
6.2 97.1 GSM375766 gid1-3_ shoot_replicate 2 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
5.2 96.7 GSM375767 gid1-3_ shoot_replicate 3 GSE15046 Transcriptome analysis of gibberellin-signaling mutants in rice
5.2 96.7 GSM154832 Root_DMSO-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 1e-34 149 Os02g0820800 9630.m05730 - Protein of unknown function DUF296 domaincontaining protein 3e-2 At4g14465 DNA-binding protein-related C.G. S.X.
0.18 3e-17 91 Os03g0270000 AK106069.1 - Protein of unknown function DUF296 domaincontaining protein 3e-3 At1g76500 SOB3 (SUPPRESSOR OF PHYB-4#3) C.G. S.X.
0.17 2e-11 71 Os02g0448000 9630.m02338 - Protein of unknown function DUF296 domaincontaining protein 8e-6 At4g22810 DNA-binding protein-related C.G. S.X.
0.15 3e-23 111 Os08g0563200 AK110263.1 - Protein of unknown function DUF296 domaincontaining protein 2e-1 At1g76500 SOB3 (SUPPRESSOR OF PHYB-4#3) C.G. S.X.
0.15 9e-8 59 Os06g0136900 AK107405.1 - Protein of unknown function DUF296 domaincontaining protein 7e-4 At4g17800 DNA-binding protein-related C.G. S.X.
0.10 6e-12 73 Os08g0159700 AK109080.1 - Protein of unknown function DUF296 domaincontaining protein 6e-1 At2g41225 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Arabidopsis thaliana At5g03240 831899 UBQ3 (POLYUBIQUITIN 3) encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments. - - - C.G. S.X.
0.04 4e-6 54 Glycine max GmaAffx.32916.1.S1_at BI972076 - - 1e+0 At5g49700 DNA-binding protein-related C.G. S.X.
0.03 8e-2 38 Hordeum vulgare HZ42B13r_at HZ42B13r - - 9e-1 At4g14320 60S ribosomal protein L36a/L44 (RPL36aB) C.G. S.X.
0.04 1e-3 46 Populus trichocarpa PtpAffx.201518.1.S1_at pmrna2994 hypothetical protein - 2e-1 At2g42940 DNA-binding family protein C.G. S.X.
0.38 2e-112 406 Triticum aestivum TaAffx.112788.1.S1_at CA620934 - - 8e-1 At1g20900 ESC (ESCAROLA) C.G. S.X.
0.05 8e-7 54 Vitis vinifera 1621103_at CB003423 - - 2e-12 At3g04570 DNA-binding protein-related C.G. S.X.
0.03 7e-2 38 Zea mays Zm.1782.1.A1_at BQ538858 hypothetical protein LOC100273445 - 2e+0 At5g60970 TCP5 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 5) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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