Gene omics information

Query gene ID Os02g0697400
Gene name
Organism Oryza sativa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.9Os02g0697400AK105636.1-4-coumarate--CoA ligase 2 (EC 6.2.1.12) (4CL 2)(4-coumaroyl-CoA synthase 2)8e-5At1g650604CL3S.X.H.G.
0.8395.8Os10g0320100AK064736.1-Flavonoid 3'-monooxygenase (EC 1.14.13.21)(Flavonoid 3'-hydroxylase) (Cytochrome P450 75B2)6e-2At5g07990TT7 (TRANSPARENT TESTA 7)S.X.H.G.
0.8395.8Os06g0288200AK071127.1-Hypothetical protein8e-1At2g47400CP12-1S.X.H.G.
0.8395.8Os06g0102100AK099468.1-Cytochrome P450 family protein1e+0At5g46020unknown proteinS.X.H.G.
0.8395.8Os07g0510500AK068586.1-UDP-glucuronosyl/UDP-glucosyltransferase familyprotein4e-3At3g21800UGT71B8 (UDP-GLUCOSYL TRANSFERASE 71B8)S.X.H.G.
0.7793.1Os02g0589000AK066288.1-Lecithin:cholesterol acyltransferase familyprotein8e-1At5g4770060S acidic ribosomal protein P1 (RPP1C)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
27.399.6GSM421719MOCK, 24 hai - rep1GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
23.399.4GSM421700XOO, 24 hai - rep2GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
23.299.3GSM421701XOO, 24 hai - rep3GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
23.199.3GSM421720MOCK, 24 hai - rep2GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
19.799.1GSM421721MOCK, 24 hai - rep3GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
19.199.0GSM421679XOC, 24 hai - rep1GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
18.799.0GSM421723MOCK, 96 hai - rep1GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
18.799.0GSM421681XOC, 24 hai - rep3GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
18.098.9GSM421726MOCK, 96 hai - rep4GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
17.798.9GSM421683XOC, 96 hai - rep1GSE16793Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.284e-51204Os08g0448000AK120964.1-4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)(4-coumaroyl-CoA synthase 1) (Clone 4CL14) (Fragment)1e-6At3g212404CL2 (4-COUMARATE:COA LIGASE 2)C.G.S.X.
0.212e-77291Os02g0177600AK070083.1-4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)(4-coumaroyl-CoA synthase 1)3e-7At3g212404CL2 (4-COUMARATE:COA LIGASE 2)C.G.S.X.
0.203e-27125Os08g0245200AK069932.1-4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)(4-coumaroyl-CoA synthase 1)3e-10At3g212404CL2 (4-COUMARATE:COA LIGASE 2)C.G.S.X.
0.193e-1895Os06g0656500AK068985.1--2e-2At3g212404CL2 (4-COUMARATE:COA LIGASE 2)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.078e-550Arabidopsis thalianaAt1g650608428144CL3encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate.---C.G.S.X.
0.094e-448Glycine maxGma.8472.1.S1_atBI9420984-coumarate:Coenzyme A ligase isoenzyme 4-2e-8At1g516804CL1 (4-COUMARATE:COA LIGASE 1)C.G.S.X.
0.370884Hordeum vulgareContig4677_atContig4677--8e-3At1g650604CL3C.G.S.X.
0.101e-759Populus trichocarpaPtpAffx.12056.3.S1_a_atCV2594944-Coumarate:CoA ligase-5e-22At1g650604CL3C.G.S.X.
0.264e-50200Triticum aestivumTaAffx.128713.1.S1_atCK215460--1e-8At3g212404CL2 (4-COUMARATE:COA LIGASE 2)C.G.S.X.
0.143e-35149Vitis vinifera1619320_atCB974305--7e-13At1g650604CL3C.G.S.X.
0.272e-133476Zea maysZm.11845.1.A1_atCO532590--3e-1At1g650604CL3C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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