Gene omics information

Query gene ID	Os02g0685900
Gene name
Organism	Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	76.3	Os02g0685900	C22384	-	Calcium dependent protein kinase	1e-16	At4g38230	CPK26	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.43	55.4	Os06g0717100	AK071437.1	-	Senescence-associated family protein	9e-4	At3g51250	senescence/dehydration-associated protein-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	Os01g0672800	AK101605.1	-	Protein of unknown function DUF1421 family protein	3e-1	At5g39950	ATTRX2 (THIOREDOXIN 2)	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	Os04g0608900	AK111698.1	-	Serine/threonine/tyrosine kinase	3e-10	At4g31170	protein kinase family protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.23	21.2	Os04g0594400	AK067019.1	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	2e-1	At4g17720	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.23	21.2	Os01g0513100	AK059183.1	-	Hypothetical protein	9e-22	At1g68410	protein phosphatase 2C-related / PP2C-related	S.X.	H.G.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.2	98.5	GSM159189	Young inflorescence (P1, upto 3 cm), biological rep 1	GSE6893	Expression data for reproductive development in rice
11.9	98.3	GSM159191	Young inflorescence (P1, upto 3 cm), biological rep 3	GSE6893	Expression data for reproductive development in rice
8.5	97.7	GSM159192	Inflorescence (P2, 3 - 5 cm), biological rep 1	GSE6893	Expression data for reproductive development in rice
8.2	97.7	GSM159193	Inflorescence (P2, 3 - 5 cm), biological rep 2	GSE6893	Expression data for reproductive development in rice
7.4	97.5	GSM159195	Inflorescence (P3, 5 - 10 cm), biological rep 1	GSE6893	Expression data for reproductive development in rice
7.4	97.5	GSM159190	Young inflorescence (P1, upto 3 cm), biological rep 2	GSE6893	Expression data for reproductive development in rice
7.1	97.4	GSM159198	Inflorescence (P4, 10 - 15 cm), biological rep 1	GSE6893	Expression data for reproductive development in rice
6.9	97.3	GSM159194	Inflorescence (P2, 3 - 5 cm), biological rep 3	GSE6893	Expression data for reproductive development in rice
6.7	97.3	GSM302919	leaf_rep2	GSE11966	Expression data from rice embryo,endosperm,root,leaf and seedling
6.7	97.3	GSM159199	Inflorescence (P4, 10 - 15 cm), biological rep 2	GSE6893	Expression data for reproductive development in rice

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	0	1241	Os04g0584600	AB042550.1	-	Calcium dependent protein kinase	3e-44	At2g17290	CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.22	5e-41	171	Os03g0789000	9631.m05646	-	Calmodulin-domain protein kinase CDPK isoform 2(Calmodulin-domain protein kinase CDPK isoform 213089-15758) (Calcium-dependent protein kinase isoform 2)	7e-20	At5g04870	CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.18	2e-40	169	Os03g0788500	AK072204.1	-	Calcium-dependent protein kinase 2	8e-30	At3g10660	CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.17	2e-34	149	Os12g0486600	9640.m02913	-	Calcium dependent protein kinase	5e-15	At5g04870	CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.15	2e-28	129	Os07g0161600	AK068414.1	-	Calmodulin-domain protein kinase CDPK isoform 2(Calmodulin-domain protein kinase CDPK isoform 213089-15758) (Calcium-dependent protein kinase isoform 2)	1e-9	At5g04870	CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.11	2e-28	129	Os01g0808400	AK112112.1	-	Calcium-dependent protein kinase (Fragment)	2e-8	At5g19360	CPK34	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.08	7e-31	137	Os11g0136600	AF319480.1	-	Calcium-dependent protein kinase (Fragment)	5e-9	At5g12180	CPK17	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.07	3e-6	54	Os11g0171500	AY144497.1	-	Calcium-dependent protein kinase SK5 (EC 2.7.1.-)(CDPK)	1e-9	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.03	5e-2	40	Os12g0169800	9640.m00650	-	Calcium-dependent protein kinase SK5 (EC 2.7.1.-)(CDPK)	2e-8	At4g09570	CPK4	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	1e-2	42	Os03g0128700	AF048691.1	-	Calcium-dependent protein kinase, isoform 11 (EC2.7.1.-) (CDPK 11)	1e-16	At2g17290	CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	1e-16	87	Arabidopsis thaliana	At4g38230	829980	CPK26	member of Calcium Dependent Protein Kinase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	4e-20	99	Glycine max	Gma.2566.1.S1_at	BE820790	-	-	4e-70	At2g17290	CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select
0.46	7e-146	515	Hordeum vulgare	Contig16157_at	Contig16157	-	-	7e-25	At4g38230	CPK26	C.G.	S.X.	Please select
0.26	2e-15	83	Populus trichocarpa	Ptp.7260.1.S1_at	DN503133	-	-	2e-20	At4g35310	CPK5 (calmodulin-domain protein kinase 5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.49	1e-124	446	Triticum aestivum	TaAffx.403.1.A1_at	CD492239	-	-	2e-8	At4g38230	CPK26	C.G.	S.X.	Please select
0.16	1e-7	56	Vitis vinifera	1621772_at	CD005226	hypothetical protein LOC100253693	-	7e-20	At2g17290	CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select
0.26	3e-129	460	Zea mays	Zm.873.1.S1_at	AW067411	-	-	3e-16	At4g38230	CPK26	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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