CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0679200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 93.1 Os02g0679200 AK110789.1 - TPR-like domain containing protein 8e-1 At5g54580 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.33 38.8 Os11g0587100 9639.m03410 - TPR-like domain containing protein 3e-1 At2g36980 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.27 27.5 Os10g0479200 NM_197022.1 - Protein prenyltransferase domain containingprotein 1e+0 At5g25220 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) S.X. H.G.
0.25 24.1 Os02g0292600 AK106688.1 - Lipolytic enzyme, G-D-S-L family protein 1e-2 At1g74460 GDSL-motif lipase/hydrolase family protein S.X. H.G.
0.18 13.7 Os01g0260000 AK108460.1 - Protein prenyltransferase domain containingprotein 2e-6 At5g56310 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.13 8.2 Os06g0530700 AK058455.1 - contains InterPro domain(s): IPR006677 5e-8 At5g60230 SEN2 (splicing endonuclease 2) S.X. H.G.
0.12 7.2 Os08g0434000 AK119426.1 - Protein prenyltransferase domain containingprotein 4e-1 At5g40405 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
42.1 99.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
40.1 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
39.0 99.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
36.9 99.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
25.2 99.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.9 99.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.4 99.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.3 99.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.4 99.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.0 99.0 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.66 0 2585 Os02g0679101 9630.m04421 - - 1e+0 At5g54580 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.02 3e-2 42 Os03g0237200 9631.m01271 - Zn-finger, C2H2 type domain containing protein 2e-7 At1g68130 AtIDD14 (Arabidopsis thaliana Indeterminate(ID)-Domain 14) C.G. S.X.
0.02 3e-2 42 Os11g0305400 9639.m01877 - O-methyltransferase, family 2 protein 2e+0 At3g13630 unknown protein C.G. S.X.
0.02 1e-1 40 Os11g0235500 9639.m01223 - Herbicide safener binding protein 2e+0 At1g64840 F-box family protein C.G. S.X.
0.01 7e-6 54 Os12g0102600 AK072365.1 - TPR-like domain containing protein 2e-2 At1g30475 - C.G. S.X.
0.01 6e-3 44 Os06g0694300 9634.m04674 - TPR-like domain containing protein 4e-6 At5g44230 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 3e-2 42 Os04g0589700 AK070506.1 - U box domain containing protein 8e-1 At1g75270 DHAR2 (DEHYDROASCORBATE REDUCTASE 2) C.G. S.X.
0.01 3e-2 42 Os10g0137000 AK119430.1 - Cyclin-like F-box domain containing protein 1e+0 At2g05380 GRP3S (GLYCINE-RICH PROTEIN 3 SHORT ISOFORM) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-1 36 Arabidopsis thaliana At5g54580 835546 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBA - - - C.G. S.X.
0.02 7e-2 40 Glycine max GmaAffx.53768.1.A1_at BE660625 Allene oxide synthase (aos1) - 4e+0 At3g11260 WOX5 (WUSCHEL RELATED HOMEOBOX 5) C.G. S.X.
0.03 4e-1 36 Hordeum vulgare EBro08_SQ012_P13_at EBro08_SQ012_P13 - - 4e-2 At2g23670 YCF37 (Arabidopsis homolog of Synechocystis YCF37) C.G. S.X.
0.02 2e-2 42 Populus trichocarpa PtpAffx.216110.1.S1_at pmrna30693 hypothetical protein - 2e+0 At5g46970 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.28384.1.S1_at CA660853 - - 4e+0 At4g14305 - C.G. S.X.
0.02 1e+1 30 Vitis vinifera 1622810_at CF414411 - - 4e-1 At3g61260 DNA-binding family protein / remorin family protein C.G. S.X.
0.02 9e-5 48 Zea mays Zm.6447.2.A1_at CO522715 - - 2e+0 At5g43460 lesion inducing protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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