CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0662200

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 79.7 Os02g0662200 AK063236.1 - YbaK/prolyl-tRNA synthetase associated regiondomain containing protein 1e-4 At4g16510 YbaK/prolyl-tRNA synthetase-related S.X. H.G.
0.40 51.1 Os03g0749900 AK061252.1 - Conserved hypothetical protein 5e-4 At3g58470 methyltransferase/ nucleic acid binding S.X. H.G.
0.40 51.1 Os02g0101100 AK068038.1 - Initiation factor 3 family protein 1e+0 At5g12870 MYB46 (MYB DOMAIN PROTEIN 46) S.X. H.G.
0.35 41.7 Os06g0677500 AK102430.1 - Protein prenyltransferase domain containingprotein 1e-9 At4g24490 protein prenyltransferase S.X. H.G.
0.29 31.1 Os03g0145800 AK065520.1 - Ankyrin repeat containing protein 9e-11 At3g09890 ankyrin repeat family protein S.X. H.G.
0.21 17.9 Os03g0387100 AF022735.1 - Proteasome subunit alpha type 2 (EC 3.4.25.1) (20Sproteasome alpha subunit B) (20S proteasome subunitalpha-2) 8e-34 At1g16470 PAB1 (PROTEASOME SUBUNIT PAB1) S.X. H.G.
0.20 16.5 Os08g0162000 BX901451 - Nonaspanin (TM9SF) family protein 9e-35 At2g01970 endomembrane protein 70, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.9 97.0 GSM275408 Bala root tip_At the wax layer_rep1 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.5 96.3 GSM275407 Azucena root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.4 96.2 GSM99881 TCHW P23_ir29 salt stress, biological rep2 GSE4438 Expression data from rice under salinity stress
4.1 96.0 GSM409432 9311_young panicle 2cm, biological rep3 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
4.1 96.0 GSM67058 IR29 control replicate 1 GSE3053 Rice salt expression
3.8 95.7 GSM275416 Azucena root tip_Before the wax layer_Rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.8 95.7 GSM67055 FL478 salt stressed replicate 1 GSE3053 Rice salt expression
3.8 95.7 GSM409434 9311_young panicle 2cm, biological rep5 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
3.6 95.5 GSM67059 IR29 control replicate 2 GSE3053 Rice salt expression
3.6 95.5 GSM275410 Bala root tip_At the wax layer_rep3 GSE10857 Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-2 40 Os03g0854200 AK069107.1 - 3' exoribonuclease domain containing protein 1e-8 At3g46210 3' exoribonuclease family domain 1-containing protein C.G. S.X.
0.02 3e-1 38 Os01g0787400 AK061223.1 - Hypothetical protein 2e+0 At1g75190 unknown protein C.G. S.X.
0.02 3e-1 38 Os04g0308600 9632.m02272 - Conserved hypothetical protein 2e+0 At4g39890 AtRABH1c (Arabidopsis Rab GTPase homolog H1c) C.G. S.X.
0.02 3e-1 38 Os10g0148100 AK099480.1 - Protein of unknown function DUF1210 family protein 9e-3 At5g67640 unknown protein C.G. S.X.
0.01 6e-2 40 Os08g0178100 AK101717.1 - Pep3/Vps18/deep orange domain containing protein 1e-10 At1g12470 Pep3/Vps18/deep orange family protein C.G. S.X.
0.01 3e-1 38 Os06g0472400 AK063108.1 - Protein of unknown function UPF0261 domaincontaining protein 6e-12 At5g66420 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 1e-4 48 Arabidopsis thaliana At4g16510 827349 YbaK/prolyl-tRNA synthetase-related F:molecular_function unknown;P:unknown;C:cellular_component unknown;OP - - - C.G. S.X.
0.04 1e-2 42 Glycine max Gma.3538.1.S1_at BI094906 - - 2e-9 At4g16510 YbaK/prolyl-tRNA synthetase-related C.G. S.X.
0.33 1e-70 266 Hordeum vulgare Contig18752_at Contig18752 - - 4e-6 At4g16510 YbaK/prolyl-tRNA synthetase-related C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.204837.1.S1_x_at pmrna9552 hypothetical protein - 4e-36 At5g12870 MYB46 (MYB DOMAIN PROTEIN 46) C.G. S.X.
0.51 5e-69 262 Triticum aestivum TaAffx.105465.1.S1_at CA733773 - - 4e+0 At4g14695 unknown protein C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1621869_at CD012157 hypothetical protein LOC100266125 - 2e+0 At4g20250 unknown protein C.G. S.X.
0.02 2e-1 36 Zea mays Zm.6513.2.S1_a_at CF043636 - - 2e-15 At2g33430 DAL1 (DIFFERENTIATION AND GREENING-LIKE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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