CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0655600

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os02g0655600 AK101560.1 - Protein of unknown function DUF676 domaincontaining protein 6e-5 At5g51180 unknown protein S.X. H.G.
0.50 68.0 Os08g0424200 AK060716.1 - Methylcrotonyl-CoA carboxylase beta chain,mitochondrial precursor (EC 6.4.1.4)(3-Methylcrotonyl-CoA carboxylase 2) (MCCase betasubunit) (3-methylcrotonyl-CoA:carbon dioxide ligase betasubunit) 2e-26 At4g34030 MCCB (3-METHYLCROTONYL-COA CARBOXYLASE) S.X. H.G.
0.47 62.3 Os10g0516300 CB620164 - Electron transfer flavoprotein-ubiquinoneoxidoreductase, mitochondrial precursor (EC 1.5.5.1)(ETF-QO) (ETF-ubiquinone oxidoreductase) (ETFdehydrogenase) (Electron-transferring- flavoproteindehydrogenase). Splice isoform 2 8e-17 At2g43400 ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase) S.X. H.G.
0.33 38.8 Os12g0605800 AK121511.1 - Methylcrotonyl-CoA carboxylase alpha chain,mitochondrial precursor (EC 6.4.1.4)(3-Methylcrotonyl-CoA carboxylase 1) (MCCase alphasubunit) (3-methylcrotonyl-CoA:carbon dioxide ligasealpha subunit) 2e-15 At1g03090 MCCA S.X. H.G.
0.27 27.5 Os04g0382300 AK101795.1 - CBS domain containing protein 4e-6 At3g48530 KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1) S.X. H.G.
0.22 19.4 Os01g0159400 CB656566 - Acyl-CoA dehydrogenase family protein 1e-6 At3g51840 ACX4 (ACYL-COA OXIDASE 4) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.1 98.8 GSM159271 Rice coleoptiles, 4 days old, anoxic, REPLICATE 1 (Sample #11) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
16.7 98.8 GSM302923 seedling_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
12.0 98.3 GSM302922 seedling_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
8.7 97.8 GSM304397 Control for the stable transgenic rice line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
8.0 97.6 GSM304654 Mutant stable line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
7.9 97.6 GSM154937 Root_tZ-treatment_30min_replicate 2 GSE6719 Cytokinin responsive genes in rice
7.8 97.6 GSM304653 Mutant stable line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
6.6 97.3 GSM159272 Rice coleoptiles, 4 days old, anoxic, REPLICATE 2 (Sample #12) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
6.6 97.3 GSM154938 Root_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
6.5 97.2 GSM304677 Unstable mutant line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 5e-4 48 Os03g0726800 AK101683.1 - Protein of unknown function DUF676 domaincontaining protein 9e-4 At1g10040 unknown protein C.G. S.X.
0.04 3e-5 52 Os02g0787100 CB668900 - Protein of unknown function DUF676 domaincontaining protein 5e-2 At1g10040 unknown protein C.G. S.X.
0.03 5e-4 48 Os09g0554200 AK108361.1 - Zn-finger, RING domain containing protein 2e-3 At4g22770 DNA-binding family protein C.G. S.X.
0.02 7e-6 54 Os07g0230500 9635.m01249 - Excinuclease ABC, C subunit, N-terminal domaincontaining protein 4e-8 At2g30350 endo/excinuclease amino terminal domain-containing protein C.G. S.X.
0.02 1e-4 50 Os02g0244100 AK065504.1 - Zn-finger, RING domain containing protein 1e-6 At1g17145 protein binding / zinc ion binding C.G. S.X.
0.01 7e-6 54 Os04g0284500 AK119323.1 - Hypothetical protein 2e+0 At2g01540 C2 domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 6e-5 50 Arabidopsis thaliana At5g51180 835192 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;FMPO - - - C.G. S.X.
0.02 5e-3 44 Glycine max GmaAffx.66307.1.S1_at BM309319 - - 9e-4 At2g02880 mucin-related C.G. S.X.
0.41 9e-64 244 Hordeum vulgare Contig11479_s_at Contig11479 - - 9e-3 At4g25770 unknown protein C.G. S.X.
0.09 3e-10 67 Populus trichocarpa PtpAffx.200312.1.S1_at pmrna617 hypothetical protein - 4e-11 At5g51180 unknown protein C.G. S.X.
0.45 3e-65 250 Triticum aestivum Ta.4973.1.S1_s_at CD930503 - - 1e-2 At4g25770 unknown protein C.G. S.X.
0.02 4e-3 42 Vitis vinifera 1614931_at CF605861 hypothetical protein LOC100241227 - 3e-1 At5g04470 SIM (SIAMESE) C.G. S.X.
0.47 6e-80 297 Zea mays Zm.4351.1.A1_at AI861482 hypothetical protein LOC100191604 - 2e-1 At1g10040 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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