CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Os02g0649900

Gene name

Organism Oryza sativa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 87.2 Os02g0649900 9630.m04172 - Iron-phytosiderophore transporter protein yellowstripe 1 2e-5 At5g24380 YSL2 (YELLOW STRIPE LIKE 2) S.X. H.G.
0.50 68.0 Os12g0282000 AK103636.1 - Hypothetical protein 8e+0 At5g63634 unknown protein S.X. H.G.
0.46 60.9 Os07g0258400 AK103557.1 - Metal transporter Nramp6 (AtNramp6) 2e-8 At1g80830 NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1) S.X. H.G.
0.44 58.1 Os09g0129600 9637.m00266 - Site-specific recombinase family protein 9e-1 At2g46610 arginine/serine-rich splicing factor, putative S.X. H.G.
0.44 58.1 Os01g0871600 AK103248.1 - TGF-beta receptor, type I/II extracellular regionfamily protein 2e-1 At5g07730 unknown protein S.X. H.G.
0.38 46.9 Os03g0751100 BU673383 - - 5e-28 At4g16370 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
51.7 99.9 GSM302918 leaf_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
40.5 99.9 GSM302919 leaf_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
33.4 99.8 GSM116398 Seedling_Control_rep2 GSE5167 Rice seedling hormone treatment
32.1 99.7 GSM281585 Rice Zhonghua11, biological rep3 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
30.9 99.7 GSM116402 Seedling_BAP treated_rep2 GSE5167 Rice seedling hormone treatment
28.3 99.6 GSM116195 Seedling_Control_rep1 GSE5167 Rice seedling hormone treatment
27.7 99.6 GSM281584 Rice Zhonghua11, biological rep2 GSE11175 Comparison of transcriptome profile between wild-type and dst mutant plants
26.9 99.6 GSM116400 Seedling_IAA treated_rep2 GSE5167 Rice seedling hormone treatment
20.4 99.1 GSM116401 Seedling_BAP treated_rep1 GSE5167 Rice seedling hormone treatment
18.9 99.0 GSM116399 Seedling_IAA treated_rep1 GSE5167 Rice seedling hormone treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.33 1e-81 305 Os04g0542800 AK070304.1 - Oligopeptide transporter OPT superfamily protein 6e-9 At5g24380 YSL2 (YELLOW STRIPE LIKE 2) C.G. S.X.
0.33 3e-30 135 Os02g0650300 AK063464.1 - Oligopeptide transporter OPT superfamily protein 4e-9 At4g24120 YSL1 (YELLOW STRIPE LIKE 1) C.G. S.X.
0.31 2e-19 99 Os04g0542200 AK120923.1 - Oligopeptide transporter OPT superfamily protein 6e-9 At5g24380 YSL2 (YELLOW STRIPE LIKE 2) C.G. S.X.
0.14 3e-8 61 Os04g0524900 9632.m04254 - Oligopeptide transporter OPT superfamily protein 2e-23 At1g65730 YSL7 (YELLOW STRIPE LIKE 7) C.G. S.X.
0.07 1e-7 59 Os04g0524500 AK067235.1 - Oligopeptide transporter OPT superfamily protein 1e-6 At1g65730 YSL7 (YELLOW STRIPE LIKE 7) C.G. S.X.
0.06 9e-9 63 Os02g0633300 9630.m04040 - EspB-like protein 5e-12 At1g65730 YSL7 (YELLOW STRIPE LIKE 7) C.G. S.X.
0.05 1e-13 79 Os04g0674600 AK069645.1 - Oligopeptide transporter OPT superfamily protein 2e-11 At3g17650 YSL5 (YELLOW STRIPE LIKE 5) C.G. S.X.
0.05 1e-10 69 Os01g0829900 AK070618.1 - Oligopeptide transporter OPT superfamily protein 1e+0 At3g17650 YSL5 (YELLOW STRIPE LIKE 5) C.G. S.X.
0.03 3e-8 61 Os04g0524800 AK064753.1 - Hypothetical protein 1e-3 At3g55730 MYB109 (myb domain protein 109) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 2e-5 52 Arabidopsis thaliana At5g24380 832509 YSL2 (YELLOW STRIPE LIKE 2) closest Arabidopsis homolog of Zea maize metal-phytosiderophore/metal-nicotianamine transporter ZmYS1 - - - C.G. S.X.
0.12 4e-7 57 Glycine max Gma.15578.1.S1_at CD414652 - - 2e-15 At5g53550 YSL3 (YELLOW STRIPE LIKE 3) C.G. S.X.
0.25 4e-17 89 Hordeum vulgare Contig16464_at Contig16464 - - 9e-6 At5g53550 YSL3 (YELLOW STRIPE LIKE 3) C.G. S.X.
0.04 9e-2 40 Populus trichocarpa PtpAffx.225632.1.S1_at pmrna45109 - - 7e-29 At1g48370 YSL8 (YELLOW STRIPE LIKE 8) C.G. S.X.
0.15 1e-18 95 Triticum aestivum TaAffx.113315.1.S1_at CA615901 - - 4e+0 At3g24315 AtSec20 C.G. S.X.
0.05 2e-5 50 Vitis vinifera 1617609_at CF207468 hypothetical protein LOC100255514 - 3e-24 At5g24380 YSL2 (YELLOW STRIPE LIKE 2) C.G. S.X.
0.39 8e-55 214 Zea mays Zm.582.1.S1_at AF186234.2 yellow stripe1 - 3e-1 At5g24380 YSL2 (YELLOW STRIPE LIKE 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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